Factsheet for GSMUA_Achr5P28780_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P33470_001	Banana	nucleus	27.96	49.33
GSMUA_Achr9P03720_001	Banana	nucleus	32.49	40.06
KRG88785	Soybean	nucleus	34.26	38.64
KRH75766	Soybean	nucleus	33.75	38.29
GSMUA_Achr3P16490_001	Banana	nucleus	16.12	38.1
Solyc09g011780.2.1	Tomato	nucleus	33.0	34.47
VIT_13s0019g03200.t01	Wine grape	nucleus	32.49	34.13
PGSC0003DMT400052395	Potato	nucleus	32.49	34.04
GSMUA_AchrUn_...	Banana	nucleus	24.18	33.92
VIT_08s0007g01540.t01	Wine grape	nucleus	34.01	32.93
GSMUA_Achr4P20150_001	Banana	nucleus	21.91	32.34
PGSC0003DMT400069921	Potato	nucleus	30.23	32.09
GSMUA_Achr4P12950_001	Banana	nucleus	21.41	31.95
GSMUA_Achr1P09750_001	Banana	nucleus	23.68	31.65
GSMUA_Achr3P28230_001	Banana	nucleus	22.92	31.6
GSMUA_Achr1P26140_001	Banana	nucleus	22.42	31.56
GSMUA_Achr9P29090_001	Banana	nucleus	16.62	31.43
Solyc05g052850.2.1	Tomato	nucleus	29.47	31.28
GSMUA_Achr9P22600_001	Banana	nucleus	22.67	31.25
GSMUA_Achr3P07700_001	Banana	nucleus	16.12	31.22
KRH15016	Soybean	nucleus	30.73	31.04
Bra007186.1-P	Field mustard	nucleus	28.97	31.0
CDX72208	Canola	nucleus	28.46	30.71
Zm00001d012379_P001	Maize	nucleus	30.98	30.67
GSMUA_Achr11P...	Banana	nucleus	14.11	30.6
OQU87862	Sorghum	nucleus	30.73	30.58
CDY27271	Canola	nucleus	28.72	30.56
GSMUA_Achr4P09450_001	Banana	nucleus	23.17	30.46
GSMUA_Achr3P13070_001	Banana	nucleus	22.17	30.34
GSMUA_Achr9P15750_001	Banana	nucleus	16.12	30.33
AT3G55730.1	Thale cress	nucleus	30.23	30.08
Os01t0850400-01	Rice	nucleus	31.23	30.02
GSMUA_Achr8P25220_001	Banana	nucleus	21.66	29.05
KRH73115	Soybean	nucleus	28.46	28.32
CDY20494	Canola	nucleus	25.19	27.17
AT2G39880.1	Thale cress	nucleus	24.69	26.7
Bra005006.1-P	Field mustard	nucleus	26.7	26.63
CDX74825	Canola	nucleus	26.45	26.18
GSMUA_Achr9P08480_001	Banana	nucleus	16.88	26.17
GSMUA_Achr10P...	Banana	nucleus	17.13	26.15
HORVU3Hr1G085570.1	Barley	plastid	29.47	25.38
GSMUA_Achr6P17630_001	Banana	nucleus	16.62	25.1
GSMUA_Achr5P27750_001	Banana	nucleus	15.87	25.0
TraesCS3A01G365200.1	Wheat	nucleus	28.97	24.89
GSMUA_Achr3P18970_001	Banana	nucleus	16.37	24.81
TraesCS3B01G397100.1	Wheat	nucleus	28.72	24.36
TraesCS3D01G358400.1	Wheat	nucleus	28.72	24.31
GSMUA_Achr11P...	Banana	nucleus	16.12	23.27
GSMUA_Achr6P15900_001	Banana	nucleus	15.87	22.91
GSMUA_Achr9P04990_001	Banana	nucleus	17.38	22.85
GSMUA_Achr10P...	Banana	nucleus	16.37	21.38
GSMUA_Achr5P23290_001	Banana	nucleus	15.87	20.86
GSMUA_Achr3P09490_001	Banana	nucleus	16.37	20.38
GSMUA_Achr10P...	Banana	nucleus	16.37	20.25
GSMUA_Achr9P17000_001	Banana	nucleus	15.37	20.07
GSMUA_Achr6P32250_001	Banana	nucleus	17.13	19.65
GSMUA_Achr6P02580_001	Banana	nucleus	17.38	19.49
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi	16.12	16.24
GSMUA_Achr7P18390_001	Banana	nucleus, plastid	17.88	15.11

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872
EnsemblPlantsGene:GSMUA_Achr5G28780_001	EnsemblPlants:GSMUA_Achr5P28780_001	EnsemblPlants:GSMUA_Achr5T28780_001	InterPro:Homeobox-like_sf	InterPro:IPR011016	InterPro:IPR013083
InterPro:IPR017930	UniProt:M0T2K2	InterPro:Myb_dom	PFAM:PF00249	PFAM:PF12906	PFscan:PS51292
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF524	InterPro:SANT/Myb	SMART:SM00717	SMART:SM00744
SUPFAM:SSF46689	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000296C81F	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G28780_001]

Coordinates

chr5:-:28794485..28801232

Molecular Weight (calculated)

43803.7 Da

IEP (calculated)

7.427

GRAVY (calculated)

-0.367

Length

397 amino acids

Sequence
(BLAST)

001: MLEGPASGGG GGGAAVEDRV KGPWSPEEDV ILSRLVSKFG ARNWSLIARG IPGRSGKSCR LRWCNQLDPY VKRRPFTEEE DRIIIAAHAI HGNKWASIAR
101: LLEGRTDNAI KNHWNSTLRR RFPLDQVVEA EEWLFWQGRG YVHLGTADVC FYLRPPPPPY SSSLPSLSPF GPTASCWYIP MISLSLSLSL SCLPHLMHLP
201: PQVRWVPYVS RGMAEATRSS DSKEEPNHSV VSVHDRDGSS PQPRTNSSGS PSSPEVDPES GLSVNPERKA ARECRICYLA LENSASESGP PIVLGCSCKH
301: DLAVAHERCA QTWFEAKGNR ICEICGSTAK NVVASGDAAS TEQMNEGDDP AMAPAQPSSS SSSDRSLWRR QCFLNFLLTF LVFLCAFSWL YHYNLPY

Best Arabidopsis Sequence Match ( AT3G55730.1 )
(BLAST)

001: MEGETHQSEP LPLASGDSDE GISAAIEAEL AELAAGDSSG GGGCGGGGGG IRSKVKGPWS TEEDAVLTKL VRKLGPRNWS LIARGIPGRS GKSCRLRWCN
101: QLDPCLKRKP FSDEEDRMII SAHAVHGNKW AVIAKLLTGR TDNAIKNHWN STLRRKYADL WNNGQWMANS VTTASVKNEN VDETTNPPSS KQQLPQGDIN
201: SSPPKPPQVS DVVMEEAANE PQEPQEQQEQ APPVVSNVPT ENNVFRPVAR VGAFSIYNPT SQKNGYRDYN IVPCEGPLIQ AAKPDSLAGK FLQSLCDEPQ
301: IPSKCGHGCS TLPAETKFSR NSVLGPEFVD YEEPSAVFNQ ELISIATDLN NIAWIKSGLD NAVVREAEQS LKMDNYNYND PRIKFTGMMP RQDFFCARS

Arabidopsis Description

MYB109MYB transcription factor-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LDW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.