Factsheet for GSMUA_Achr10P05080_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P32250_001	Banana	nucleus	68.22	63.29
GSMUA_Achr9P04990_001	Banana	nucleus	58.88	62.58
GSMUA_Achr11P...	Banana	nucleus	34.89	61.2
GSMUA_Achr6P15900_001	Banana	nucleus	52.02	60.73
GSMUA_Achr10P...	Banana	nucleus	55.45	58.55
GSMUA_Achr3P09490_001	Banana	nucleus	53.89	54.23
GSMUA_Achr9P17000_001	Banana	nucleus	50.78	53.62
Os01t0274800-01	Rice	nucleus	42.99	52.08
GSMUA_Achr3P16490_001	Banana	nucleus	26.48	50.6
Zm00001d040423_P001	Maize	nucleus	44.86	48.32
Zm00001d008251_P002	Maize	nucleus	44.55	47.83
GSMUA_Achr3P07700_001	Banana	nucleus	30.53	47.8
EES02758	Sorghum	nucleus	44.86	47.52
GSMUA_Achr5P27750_001	Banana	nucleus	37.07	47.22
GSMUA_Achr9P29090_001	Banana	nucleus	30.53	46.67
GSMUA_Achr9P15750_001	Banana	nucleus	30.53	46.45
EES02759	Sorghum	nucleus	40.19	45.74
Bra039036.1-P	Field mustard	nucleus	27.1	45.08
TraesCS3B01G217100.1	Wheat	nucleus	41.74	42.81
Zm00001d040426_P001	Maize	nucleus	36.76	42.45
GSMUA_Achr6P17630_001	Banana	nucleus	34.58	42.21
AT5G39700.1	Thale cress	nucleus	24.92	42.11
GSMUA_Achr3P18970_001	Banana	nucleus	33.96	41.6
TraesCS3D01G191400.1	Wheat	nucleus	41.43	41.43
GSMUA_Achr9P08480_001	Banana	nucleus	32.71	41.02
TraesCS3A01G187800.1	Wheat	nucleus	41.43	40.92
HORVU3Hr1G038700.2	Barley	nucleus	41.74	40.61
GSMUA_Achr10P...	Banana	nucleus	32.71	40.38
GSMUA_Achr11P...	Banana	nucleus	32.71	38.18
CDY67808	Canola	nucleus	18.07	36.48
CDY44415	Canola	nucleus	29.59	36.4
Bra025652.1-P	Field mustard	nucleus	28.66	35.52
GSMUA_Achr5P23290_001	Banana	nucleus	33.02	35.1
CDY30264	Canola	nucleus	28.35	35.0
GSMUA_Achr6P02580_001	Banana	nucleus	38.01	34.46
CDY20004	Canola	nucleus	30.22	33.8
Bra033078.1-P	Field mustard	nucleus	29.59	33.22
CDY66025	Canola	nucleus	29.59	32.99
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi	40.19	32.74
AT3G29020.2	Thale cress	nucleus	30.53	32.13
CDY66170	Canola	nucleus	29.91	30.57
GSMUA_Achr6P33470_001	Banana	nucleus	19.94	28.44
GSMUA_Achr4P20150_001	Banana	nucleus	23.05	27.51
GSMUA_Achr4P12950_001	Banana	nucleus	22.12	26.69
GSMUA_Achr1P26140_001	Banana	nucleus	22.74	25.89
CDX74436	Canola	nucleus	28.66	25.48
GSMUA_Achr1P09750_001	Banana	nucleus	23.05	24.92
GSMUA_Achr3P13070_001	Banana	nucleus	22.43	24.83
GSMUA_Achr8P25220_001	Banana	nucleus	22.12	23.99
GSMUA_Achr9P22600_001	Banana	nucleus	21.5	23.96
GSMUA_AchrUn_...	Banana	nucleus	20.87	23.67
GSMUA_Achr4P09450_001	Banana	nucleus	22.12	23.51
GSMUA_Achr7P18390_001	Banana	nucleus, plastid	34.27	23.4
GSMUA_Achr3P28230_001	Banana	nucleus	20.56	22.92
GSMUA_Achr9P03720_001	Banana	nucleus	21.81	21.74
GSMUA_Achr5P28780_001	Banana	nucleus	20.25	16.37

Protein Annotations

EnsemblPlants:GSMUA_Achr10P05080_001	EnsemblPlants:GSMUA_Achr10T05080_001	EnsemblPlantsGene:GSMUA_Achr10G05080_001	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF473	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000296BC1C	UniProt:M0RFI5	MapMan:15.5.2.1	:	:

Description

MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G05080_001]

Coordinates

chr10:-:14706223..14707936

Molecular Weight (calculated)

36073.3 Da

IEP (calculated)

9.756

GRAVY (calculated)

-0.876

Length

321 amino acids

Sequence
(BLAST)

001: MAPYELQHAG EMELFPAAPP TFLAVMEGHE NPENGKSYNK GKEEEGGHGI IHETEQQHKL CARGHWRPAE DAKLKELVSQ YGPQNWNLIA EKLEGRSGKS
101: CRLRWFNQLD PRINRKAFSE EEEERLLAAH RLYGNKWAQI ARLLPGRTDN AVKNHWHVIM ARKQREQSNA RRSRNPPARS PIFFPSQAQA LPRRKEVSTS
201: NNACSGESGI SGTRDECDST CTDLSLNSLT SRIAPSFLNR RRSPSQQPHS FDMLDGSDEK VVAAARNASY EKLGDSGGSF FSHGARPVAY HMRNALAHGQ
301: KRHGREKTRL PFIDFLGVGA T

Best Arabidopsis Sequence Match ( AT5G17800.1 )
(BLAST)

001: MNPNLLEKDL RGKETTNGSI RYKEANNFRS LPNSHTAACK TSLNNPSISR NHPHNKSASV LESEDEHGNE RGENEKSLRM RGKSGINTKV CSRGHWRPTE
101: DAKLKELVAQ FGPQNWNLIS NHLLGRSGKS CRLRWFNQLD PRINKRAFTE EEEFRLLAAH RAYGNKWALI SRLFPGRTDN AVKNHWHVIM ARRTRESQRQ
201: RQQPPPTLSR DAEMTVSSSC RYNQGKFINE EDDDDDVSAV STCTTELSLT PPSSAYQPRF FNYDSTLASG KDGQCVQRAE VNGIYGKKMD HQNHHTISVS
301: ERKVEMKMRS GYYYFDFLGV GAS

Arabidopsis Description

MYB56Transcription factor MYB56 [Source:UniProtKB/Swiss-Prot;Acc:Q6R053]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.