Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20004 | Canola | nucleus | 74.43 | 79.09 |
| CDY44415 | Canola | nucleus | 66.89 | 78.16 |
| CDY66025 | Canola | nucleus | 73.77 | 78.12 |
| Bra039036.1-P | Field mustard | nucleus | 49.18 | 77.72 |
| CDY66170 | Canola | nucleus | 76.72 | 74.52 |
| Bra033078.1-P | Field mustard | nucleus | 67.54 | 72.03 |
| AT5G39700.1 | Thale cress | nucleus | 26.56 | 42.63 |
| GSMUA_Achr5P27750_001 | Banana | nucleus | 31.15 | 37.7 |
| Os01t0274800-01 | Rice | nucleus | 32.13 | 36.98 |
| AT1G73410.1 | Thale cress | nucleus | 29.18 | 36.63 |
| GSMUA_Achr6P15900_001 | Banana | nucleus | 31.8 | 35.27 |
| AT1G17950.1 | Thale cress | nucleus | 27.87 | 34.14 |
| AT4G33450.1 | Thale cress | nucleus | 27.21 | 33.2 |
| TraesCS3B01G217100.1 | Wheat | nucleus | 33.44 | 32.59 |
| GSMUA_Achr10P... | Banana | nucleus | 32.46 | 32.57 |
| GSMUA_Achr9P04990_001 | Banana | nucleus | 32.13 | 32.45 |
| GSMUA_Achr9P17000_001 | Banana | nucleus | 31.8 | 31.91 |
| GSMUA_Achr3P09490_001 | Banana | nucleus | 33.11 | 31.66 |
| HORVU3Hr1G038700.2 | Barley | nucleus | 34.1 | 31.52 |
| TraesCS3D01G191400.1 | Wheat | nucleus | 33.11 | 31.46 |
| TraesCS3A01G187800.1 | Wheat | nucleus | 33.44 | 31.38 |
| AT1G69560.2 | Thale cress | nucleus | 35.08 | 30.92 |
| GSMUA_Achr10P... | Banana | nucleus | 32.13 | 30.53 |
| AT5G17800.1 | Thale cress | nucleus | 32.13 | 30.34 |
| EES02760 | Sorghum | nucleus | 26.56 | 30.34 |
| GSMUA_Achr6P32250_001 | Banana | nucleus | 33.11 | 29.19 |
| Zm00001d040428_P001 | Maize | nucleus | 26.56 | 28.62 |
| AT1G26780.2 | Thale cress | nucleus | 33.11 | 28.13 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, golgi | 33.11 | 25.63 |
| AT5G67300.1 | Thale cress | nucleus | 22.95 | 22.95 |
| AT3G50060.1 | Thale cress | nucleus | 21.64 | 21.93 |
| AT2G23290.1 | Thale cress | nucleus | 21.31 | 21.04 |
| AT4G37260.1 | Thale cress | nucleus | 21.97 | 20.94 |
| AT2G39880.1 | Thale cress | nucleus | 21.64 | 17.98 |
| AT3G09230.1 | Thale cress | nucleus | 20.98 | 16.29 |
| AT3G55730.1 | Thale cress | nucleus | 20.98 | 16.04 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:822542 | UniProt:A0A178V7Z8 | ProteinID:AEE77522.1 | ArrayExpress:AT3G29020 |
| EnsemblPlantsGene:AT3G29020 | RefSeq:AT3G29020 | TAIR:AT3G29020 | RefSeq:AT3G29020-TAIR-G | EnsemblPlants:AT3G29020.2 | TAIR:AT3G29020.2 |
| Unigene:At.5969 | UniProt:F4J1R5 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0030154 | GO:GO:0043565 |
| GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | Symbol:MYB110 | InterPro:Myb_dom | RefSeq:NP_001078220.1 |
| ProteinID:OAP02006.1 | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF473 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0001505518 | SEG:seg | : | : |
Description
MYB110Myb domain protein 110 [Source:UniProtKB/TrEMBL;Acc:F4J1R5]
Coordinates
chr3:-:11008079..11009456
Molecular Weight (calculated)
35290.5 Da
IEP (calculated)
8.981
GRAVY (calculated)
-0.827
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MKMDFSCFQE YPFEFHCRGT TFNGFRENNA VSETVEEFCN KRRMQKKSDD LKTKKKKKQS VSRVCSRGHW RISEDTQLME LVSVYGPQNW NHIAESMQGR
101: TGKSCRLRWF NQLDPRINKR AFSDEEEERL LAAHRAFGNK WAMIAKLFNG RTDNALKNHW HVLMARKMRQ QSSSYVQRFN GSAHESNTDH KIFNLSPGNV
201: DDDEDVNLKK CSWEMLKEGT TNLKAQYLQE EYSSSRMPMQ GPHHHYSTFP ADSLALTLHV SIQEPSSSSS LSLPSSSTTG EHTMVTRYFE TIKPPAFIDF
301: LGVGH
101: TGKSCRLRWF NQLDPRINKR AFSDEEEERL LAAHRAFGNK WAMIAKLFNG RTDNALKNHW HVLMARKMRQ QSSSYVQRFN GSAHESNTDH KIFNLSPGNV
201: DDDEDVNLKK CSWEMLKEGT TNLKAQYLQE EYSSSRMPMQ GPHHHYSTFP ADSLALTLHV SIQEPSSSSS LSLPSSSTTG EHTMVTRYFE TIKPPAFIDF
301: LGVGH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.