Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96475 | Canola | nucleus | 81.48 | 86.84 |
| CDX72988 | Canola | nucleus | 80.66 | 86.73 |
| Bra015992.1-P | Field mustard | nucleus | 81.07 | 86.4 |
| CDY58312 | Canola | nucleus | 81.48 | 84.62 |
| Bra008096.1-P | Field mustard | nucleus | 81.48 | 84.62 |
| CDX82074 | Canola | nucleus | 80.66 | 84.12 |
| AT1G17950.1 | Thale cress | nucleus | 65.84 | 64.26 |
| VIT_17s0000g01890.t01 | Wine grape | nucleus | 52.26 | 57.47 |
| GSMUA_Achr9P29090_001 | Banana | nucleus | 47.74 | 55.24 |
| KRH09502 | Soybean | nucleus | 52.26 | 54.27 |
| KRH38975 | Soybean | nucleus | 51.85 | 53.16 |
| PGSC0003DMT400079714 | Potato | nucleus | 50.21 | 50.0 |
| EER93554 | Sorghum | nucleus | 46.5 | 47.28 |
| Os03t0720800-01 | Rice | nucleus | 46.5 | 46.12 |
| Zm00001d033815_P001 | Maize | nucleus | 46.91 | 45.97 |
| Zm00001d013399_P001 | Maize | nucleus | 45.27 | 45.83 |
| HORVU4Hr1G008640.1 | Barley | nucleus | 45.68 | 45.68 |
| TraesCS4B01G052400.2 | Wheat | nucleus | 45.27 | 44.18 |
| TraesCS4D01G052600.1 | Wheat | nucleus | 44.86 | 43.6 |
| AT4G33450.1 | Thale cress | nucleus | 41.98 | 40.8 |
| TraesCS4A01G262500.3 | Wheat | nucleus | 45.27 | 39.86 |
| AT5G39700.1 | Thale cress | nucleus | 27.57 | 35.26 |
| AT5G17800.1 | Thale cress | nucleus | 42.39 | 31.89 |
| AT1G69560.2 | Thale cress | nucleus | 41.98 | 29.48 |
| AT3G29020.2 | Thale cress | nucleus | 36.63 | 29.18 |
| AT1G26780.2 | Thale cress | nucleus | 41.15 | 27.86 |
| AT5G67300.1 | Thale cress | nucleus | 28.81 | 22.95 |
| AT3G50060.1 | Thale cress | nucleus | 27.16 | 21.93 |
| AT2G23290.1 | Thale cress | nucleus | 26.34 | 20.71 |
| AT4G37260.1 | Thale cress | nucleus | 25.93 | 19.69 |
| AT3G09230.1 | Thale cress | nucleus | 29.22 | 18.07 |
| AT2G39880.1 | Thale cress | nucleus | 26.75 | 17.71 |
| AT3G55730.1 | Thale cress | nucleus | 25.1 | 15.29 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:843676 | UniProt:A0A178WGB1 | ProteinID:AAG30986.1 | ProteinID:AEE35458.1 |
| EMBL:AF062890 | EMBL:AK227402 | ArrayExpress:AT1G73410 | EnsemblPlantsGene:AT1G73410 | RefSeq:AT1G73410 | TAIR:AT1G73410 |
| RefSeq:AT1G73410-TAIR-G | EnsemblPlants:AT1G73410.1 | TAIR:AT1G73410.1 | Symbol:ATMYB54 | EMBL:AY519569 | Unigene:At.10910 |
| EMBL:BT024851 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 |
| GO:GO:0071555 | GO:GO:2000652 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | RefSeq:NP_177484.1 |
| ProteinID:OAP17419.1 | PFAM:PF00249 | PO:PO:0000230 | PO:PO:0000272 | PO:PO:0005352 | PO:PO:0005848 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020100 |
| PO:PO:0025022 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF665 | UniProt:Q9FX36 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000009F9F3 | SEG:seg | : | : |
Description
ATMYB54MYB54 [Source:UniProtKB/TrEMBL;Acc:A0A178WGB1]
Coordinates
chr1:+:27601593..27603317
Molecular Weight (calculated)
28206.3 Da
IEP (calculated)
10.176
GRAVY (calculated)
-0.810
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MIMCSRGHWR PAEDEKLKDL VEQYGPHNWN AIALKLPGRS GKSCRLRWFN QLDPRINRNP FTEEEEERLL AAHRIHGNRW SIIARLFPGR TDNAVKNHWH
101: VIMARRTRQT SKPRLLPSTT SSSSLMASEQ IMMSSGGYNH NYSSDDRKKI FPADFINFPY KFSHINHLHF LKEFFTGKIA LNHKANQSKK PMEFYNFLQV
201: NTDSNKSEII DQDSGQSKRS DSDTKHESHV PFFDFLSVGN SAS
101: VIMARRTRQT SKPRLLPSTT SSSSLMASEQ IMMSSGGYNH NYSSDDRKKI FPADFINFPY KFSHINHLHF LKEFFTGKIA LNHKANQSKK PMEFYNFLQV
201: NTDSNKSEII DQDSGQSKRS DSDTKHESHV PFFDFLSVGN SAS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.