Factsheet for Os03t0720800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G008640.1	Barley	nucleus	80.41	81.07
EER93554	Sorghum	nucleus	78.78	80.75
TraesCS4B01G052400.2	Wheat	nucleus	78.78	77.51
TraesCS4D01G052600.1	Wheat	nucleus	78.78	77.2
Zm00001d033815_P001	Maize	nucleus	77.96	77.02
Zm00001d013399_P001	Maize	nucleus	74.29	75.83
TraesCS4A01G262500.3	Wheat	nucleus	82.04	72.83
CDY35992	Canola	nucleus	39.59	61.78
CDY21728	Canola	nucleus	38.78	60.51
GSMUA_Achr9P29090_001	Banana	nucleus	49.39	57.62
VIT_17s0000g01890.t01	Wine grape	nucleus	51.84	57.47
CDX83880	Canola	nucleus	40.82	54.95
KRH38975	Soybean	nucleus	50.61	52.32
KRH09502	Soybean	nucleus	48.98	51.28
CDX72988	Canola	nucleus	45.31	49.12
CDX96475	Canola	nucleus	45.31	48.68
Bra015992.1-P	Field mustard	nucleus	45.31	48.68
CDX82074	Canola	nucleus	46.12	48.5
CDX96742	Canola	nucleus	47.76	48.35
Bra016575.1-P	Field mustard	nucleus	47.76	48.35
AT1G17950.1	Thale cress	nucleus	48.98	48.19
CDY58312	Canola	nucleus	45.71	47.86
Bra008096.1-P	Field mustard	nucleus	45.71	47.86
CDX81853	Canola	nucleus	48.16	47.77
PGSC0003DMT400079714	Potato	nucleus	47.35	47.54
Bra031008.1-P	Field mustard	nucleus	47.76	47.37
CDY21727	Canola	nucleus	47.76	46.61
AT1G73410.1	Thale cress	nucleus	46.12	46.5
Os01t0274800-01	Rice	nucleus	43.67	40.38
Os11t0207600-00	Rice	nucleus, plastid	40.41	37.08
Os08t0435700-00	Rice	nucleus	36.33	34.5
Os01t0977300-01	Rice	nucleus	25.31	24.8
Os08t0450900-00	Rice	nucleus	20.0	24.5
Os02t0187700-00	Rice	nucleus	28.57	23.26
Os06t0637500-02	Rice	cytosol, mitochondrion, nucleus	28.16	22.19
Os09t0106700-01	Rice	nucleus	27.35	21.0
Os01t0850400-01	Rice	nucleus	27.76	16.46
Os05t0350900-01	Rice	nucleus	9.39	10.9
Os08t0435725-00	Rice	cytosol	3.27	8.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:4333934	ProteinID:AAM47303.1	ProteinID:AAT77852.1	ProteinID:ABF98587.1
EMBL:AK111560	ProteinID:BAF13015.1	ProteinID:BAS86123.1	ProteinID:EAZ28401.1	GO:GO:0000981	GO:GO:0001135
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	EnsemblPlantsGene:Os03g0720800	EnsemblPlants:Os03t0720800-01	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF578	UniProt:Q8LLP3	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000009D9BC	RefSeq:XP_015628938.1	SEG:seg	:	:

Description

myb transcription factor 52, transcription factor MYB52Similar to MYB transcription factor R2R3 type. (Os03t0720800-01)

Coordinates

chr3:+:29236187..29238382

Molecular Weight (calculated)

27527.0 Da

IEP (calculated)

8.148

GRAVY (calculated)

-0.906

Length

245 amino acids

Sequence
(BLAST)

001: MCTRGHWRPS EDEKLKELVA RYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRSPFT EEEEELLLAS HRAHGNRWAV IARLFPGRTD NAVKNHWHVI
101: MARRCRERMR LSNRRGGAAA AGAAKGDESP ARISNGEKTA TRPPATNGSG MAMASLLDKY RRECGAAGLF AIGRHHNSKE DYCSSTNEDT SKSVEFYDFL
201: QVNASSSDTK CGSSIEEQED NRDDDQAEGQ VQLIDFMEVG TTSRQ

Best Arabidopsis Sequence Match ( AT1G17950.1 )
(BLAST)

001: MMCSRGHWRP AEDEKLRELV EQFGPHNWNA IAQKLSGRSG KSCRLRWFNQ LDPRINRNPF TEEEEERLLA SHRIHGNRWS VIARFFPGRT DNAVKNHWHV
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC

Arabidopsis Description

MYB52Transcription factor MYB52 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0C4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.