Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96742 | Canola | nucleus | 98.35 | 98.35 |
| CDY35992 | Canola | nucleus | 56.2 | 86.62 |
| AT1G17950.1 | Thale cress | nucleus | 85.95 | 83.53 |
| Bra031008.1-P | Field mustard | nucleus | 82.23 | 80.57 |
| CDY21727 | Canola | nucleus | 83.47 | 80.48 |
| Bra015992.1-P | Field mustard | nucleus | 61.98 | 65.79 |
| Bra008096.1-P | Field mustard | nucleus | 62.81 | 64.96 |
| VIT_17s0000g01890.t01 | Wine grape | nucleus | 54.13 | 59.28 |
| KRH38975 | Soybean | nucleus | 54.13 | 55.27 |
| GSMUA_Achr9P29090_001 | Banana | nucleus | 47.93 | 55.24 |
| KRH09502 | Soybean | nucleus | 52.89 | 54.7 |
| PGSC0003DMT400079714 | Potato | nucleus | 52.07 | 51.64 |
| EER93554 | Sorghum | nucleus | 47.93 | 48.54 |
| Os03t0720800-01 | Rice | nucleus | 48.35 | 47.76 |
| Zm00001d033815_P001 | Maize | nucleus | 48.76 | 47.58 |
| Zm00001d013399_P001 | Maize | nucleus | 46.69 | 47.08 |
| HORVU4Hr1G008640.1 | Barley | nucleus | 47.11 | 46.91 |
| TraesCS4B01G052400.2 | Wheat | nucleus | 46.69 | 45.38 |
| TraesCS4D01G052600.1 | Wheat | nucleus | 45.04 | 43.6 |
| TraesCS4A01G262500.3 | Wheat | nucleus | 47.11 | 41.3 |
| Bra011441.1-P | Field mustard | nucleus | 39.67 | 38.55 |
| Bra039036.1-P | Field mustard | nucleus | 30.58 | 38.34 |
| Bra034565.1-P | Field mustard | nucleus | 38.84 | 37.45 |
| Bra037004.1-P | Field mustard | nucleus | 35.95 | 36.1 |
| Bra025652.1-P | Field mustard | nucleus | 35.54 | 33.2 |
| Bra023637.1-P | Field mustard | nucleus | 43.39 | 33.02 |
| Bra006422.1-P | Field mustard | nucleus | 42.15 | 32.59 |
| Bra002107.1-P | Field mustard | nucleus | 42.56 | 31.79 |
| Bra003995.1-P | Field mustard | nucleus | 38.84 | 31.65 |
| Bra004394.1-P | Field mustard | nucleus | 39.67 | 30.0 |
| Bra033078.1-P | Field mustard | nucleus | 34.71 | 29.37 |
| Bra016285.1-P | Field mustard | nucleus | 40.08 | 27.48 |
| Bra012149.1-P | Field mustard | nucleus | 25.62 | 20.95 |
| Bra036048.1-P | Field mustard | nucleus | 22.73 | 20.68 |
| Bra012910.1-P | Field mustard | nucleus | 24.38 | 20.14 |
| Bra017813.1-P | Field mustard | nucleus | 21.9 | 20.0 |
| Bra001323.1-P | Field mustard | nucleus | 27.69 | 20.0 |
| Bra032176.1-P | Field mustard | nucleus | 23.14 | 19.18 |
| Bra029990.1-P | Field mustard | nucleus | 23.14 | 19.05 |
| Bra010593.1-P | Field mustard | nucleus | 23.97 | 19.02 |
| Bra011749.1-P | Field mustard | nucleus | 24.38 | 17.99 |
| Bra034057.1-P | Field mustard | nucleus | 27.69 | 17.31 |
| Bra007186.1-P | Field mustard | nucleus | 25.21 | 16.44 |
| Bra005006.1-P | Field mustard | nucleus | 26.45 | 16.08 |
Protein Annotations
| EnsemblPlants:Bra016575.1 | EnsemblPlants:Bra016575.1-P | EnsemblPlantsGene:Bra016575 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF665 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI0002547108 | UniProt:M4DJ97 | MapMan:15.5.2.1 | : | : |
Description
AT1G17950 (E=4e-117) ATMYB52, BW52, MYB52 | MYB52 (MYB DOMAIN PROTEIN 52); DNA binding / transcription factor
Coordinates
chrA08:-:19125200..19126441
Molecular Weight (calculated)
28161.4 Da
IEP (calculated)
9.288
GRAVY (calculated)
-0.866
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MMCSRGHWRP AEDEKLRELV QQFGPHNWNA IAQKLTGRSG KSCRLRWFNQ LDPRINRTPF TEEEEKRLLA SHRIHGNRWS VIARFFPGRT DNAVKNHWHV
101: IMARRGRERS KMRPRSLGHD GTEAGPGMMG YKDCDKKRRL ATTIDINYPY SFSHINHFQI LKEFLTGKIG FCNSTTPMNE GALDQTKRPM EFYNFLQVKT
201: DSKPEVIHNS RKEEDEDEED VDNCVPFFDF LSVGNSASKG LC
101: IMARRGRERS KMRPRSLGHD GTEAGPGMMG YKDCDKKRRL ATTIDINYPY SFSHINHFQI LKEFLTGKIG FCNSTTPMNE GALDQTKRPM EFYNFLQVKT
201: DSKPEVIHNS RKEEDEDEED VDNCVPFFDF LSVGNSASKG LC
001: MMCSRGHWRP AEDEKLRELV EQFGPHNWNA IAQKLSGRSG KSCRLRWFNQ LDPRINRNPF TEEEEERLLA SHRIHGNRWS VIARFFPGRT DNAVKNHWHV
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC
Arabidopsis Description
MYB52Transcription factor MYB52 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0C4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.