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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000214.1-P
Bra001302.1-P
Bra001412.1-P
Bra002368.1-P
Bra004677.1-P
Bra006595.1-P
Bra007528.1-P
Bra014221.1-P
Bra014494.1-P
Bra018296.1-P
Bra018304.1-P
Bra021651.1-P
Bra022807.1-P
Bra024408.1-P
Bra029780.1-P
Bra031849.1-P
Bra033467.1-P
Bra034075.1-P
Bra034827.1-P
Bra036240.1-P
Bra039652.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G23290.1 Bra014221.1-P AT1G49850.1 21798944
AT2G23290.1 Bra039652.1-P AT1G49850.1 21798944
AT2G23290.1 Bra018304.1-P AT2G30580.1 21798944
AT2G23290.1 Bra021651.1-P AT2G30580.1 21798944
AT2G23290.1 Bra022807.1-P AT2G30580.1 21798944
AT2G23290.1 Bra000214.1-P AT2G41090.1 17360592
AT2G23290.1 Bra000214.1-P AT2G41100.1 17360592
AT2G23290.1 Bra004677.1-P AT2G42260.1 21798944
AT2G23290.1 Bra001302.1-P AT3G09630.1 21798944
AT2G23290.1 Bra029780.1-P AT3G09630.1 21798944
AT2G23290.1 Bra034075.1-P AT3G09630.1 21798944
AT2G23290.1 Bra001412.1-P AT3G11590.1 21798944
AT2G23290.1 Bra034827.1-P AT3G11590.1 21798944
AT2G23290.1 Bra018296.1-P AT3G51920.1 17360592
AT2G23290.1 Bra033467.1-P AT3G51920.1 17360592
AT2G23290.1 Bra007528.1-P AT3G60360.1 21798944
AT2G23290.1 Bra014494.1-P AT3G60360.1 21798944
AT2G23290.1 Bra036240.1-P AT4G02770.1 21798944
AT2G23290.1 Bra039723.1-P AT4G14640.1 17360592
AT2G23290.1 Bra002368.1-P AT5G21274.1 17360592
AT2G23290.1 Bra006595.1-P AT5G21274.1 17360592
AT2G23290.1 Bra024408.1-P AT5G65683.1 21798944
AT2G23290.1 Bra031849.1-P AT5G65683.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY38933 Canola nucleus 99.32 99.32
AT2G23290.1 Thale cress nucleus 77.4 73.14
Bra017813.1-P Field mustard nucleus 60.62 66.79
Bra011749.1-P Field mustard nucleus 73.63 65.55
Bra010593.1-P Field mustard nucleus 68.15 65.25
Bra012149.1-P Field mustard nucleus 53.77 53.04
KRH28419 Soybean nucleus 53.42 52.53
Bra036048.1-P Field mustard nucleus 47.6 52.26
VIT_07s0129g01050.t01 Wine grape nucleus 55.82 52.24
KRH57983 Soybean nucleus 52.4 51.86
KRH77058 Soybean nucleus 53.42 51.15
VIT_18s0001g09850.t01 Wine grape nucleus 54.45 50.8
Bra012910.1-P Field mustard nucleus 48.63 48.46
Zm00001d005300_P001 Maize nucleus 46.23 47.37
Os09t0106700-01 Rice nucleus 51.37 47.02
Bra029990.1-P Field mustard nucleus 46.23 45.92
TraesCS5B01G157300.1 Wheat nucleus 52.4 45.67
Solyc02g092930.1.1 Tomato nucleus 55.82 45.15
PGSC0003DMT400064306 Potato mitochondrion, nucleus 57.19 45.01
TraesCS5A01G159600.1 Wheat nucleus 51.71 44.94
TraesCS5D01G164600.1 Wheat nucleus 51.71 44.02
Zm00001d019712_P001 Maize nucleus 51.71 43.77
EER98550 Sorghum nucleus 52.4 41.8
HORVU5Hr1G049880.1 Barley plastid 51.37 35.38
Bra039036.1-P Field mustard nucleus 21.58 32.64
Bra001323.1-P Field mustard nucleus 30.48 26.57
Bra015992.1-P Field mustard nucleus 20.21 25.88
Bra011441.1-P Field mustard nucleus 21.58 25.3
Bra008096.1-P Field mustard nucleus 20.21 25.21
Bra034057.1-P Field mustard nucleus 32.88 24.81
Bra007186.1-P Field mustard nucleus 31.51 24.8
Bra034565.1-P Field mustard nucleus 21.23 24.7
Bra037004.1-P Field mustard nucleus 20.21 24.48
Bra025652.1-P Field mustard nucleus 20.89 23.55
Bra031008.1-P Field mustard nucleus 19.86 23.48
Bra016575.1-P Field mustard nucleus 19.18 23.14
Bra005006.1-P Field mustard nucleus 30.82 22.61
Bra003995.1-P Field mustard nucleus 22.95 22.56
Bra033078.1-P Field mustard nucleus 21.92 22.38
Bra006422.1-P Field mustard nucleus 22.6 21.09
Bra002107.1-P Field mustard nucleus 23.29 20.99
Bra004394.1-P Field mustard nucleus 22.6 20.62
Bra023637.1-P Field mustard nucleus 22.26 20.44
Bra016285.1-P Field mustard nucleus 21.92 18.13
Protein Annotations
EnsemblPlants:Bra032176.1EnsemblPlants:Bra032176.1-PEnsemblPlantsGene:Bra032176Gene3D:1.10.10.60GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0005488GO:GO:0043565InterPro:Homeobox-like_sfInterPro:IPR017930InterPro:Myb_dom
InterPro:SANT/MybPANTHER:PTHR10641PANTHER:PTHR10641:SF691PFAM:PF00249PFscan:PS51294SEG:seg
SMART:SM00717SUPFAM:SSF46689UniParc:UPI00025445CEUniProt:M4ETP4MapMan:15.5.2.1:
Description
AT2G23290 (E=2e-095) AtMYB70 | AtMYB70 (myb domain protein 70); DNA binding / transcription factor
Coordinates
chrA04:-:10289669..10290547
Molecular Weight (calculated)
31394.0 Da
IEP (calculated)
8.331
GRAVY (calculated)
-0.550
Length
292 amino acids
Sequence
(BLAST)
001: MPGSTRKETD RIKGPWSPEE DQLLQTLVQK HGPRNWSLIS KPISGRSGKS CRLRWCNQLS PEVEHRAFSP EEDEMILLAH ARFGNKWATI ARLLNGRTDN
101: AIKNHWNSTL KRKCSGGGGW TSDDGGNGGY DGSLTDEQPL KRTASGGGGG GGVVSTGLFM SPGSPSGSDV SEQSSGPVSH VYKPKARAGG VVIESAVKDP
201: ATSLSLSLPW VNELTKGRDT AELFPARKQE EERGTFSGEF MTVVQEMIKT EVRSYMAELQ LGIGGGGSSC MVQGVNGPSV GFRNFIEIVK IE
Best Arabidopsis Sequence Match ( AT2G23290.1 )
(BLAST)
001: MSGSTRKEMD RIKGPWSPEE DDLLQSLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRGFTA EEDDTIILAH ARFGNKWATI ARLLNGRTDN
101: AIKNHWNSTL KRKCSGGGGG GEEGQSCDFG GNGGYDGNLT DEKPLKRRAS GGGGVVVVTA LSPTGSDVSE QSQSSGSVLP VSSSCHVFKP TARAGGVVIE
201: SSSPEEEEKD PMTCLRLSLP WVNESTTPPE LFPVKREEEE EKEREISGLG GDFMTVVQEM IKTEVRSYMA DLQLGNGGGA GGGASSCMVQ GTNGRNVGFR
301: EFIGLGRIE
Arabidopsis Description
AtMYB70At2g23280 [Source:UniProtKB/TrEMBL;Acc:O22179]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.