Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH28419 | Soybean | nucleus | 89.51 | 91.92 |
| VIT_07s0129g01050.t01 | Wine grape | nucleus | 67.87 | 66.35 |
| KRH57983 | Soybean | nucleus | 63.93 | 66.1 |
| KRH05621 | Soybean | nucleus | 53.11 | 60.45 |
| CDY22442 | Canola | nucleus | 52.46 | 58.18 |
| KRH61351 | Soybean | nucleus | 49.18 | 57.92 |
| KRH15420 | Soybean | nucleus | 51.15 | 57.14 |
| CDX75635 | Canola | nucleus | 55.74 | 56.86 |
| CDY44045 | Canola | nucleus | 53.11 | 56.84 |
| CDX69287 | Canola | nucleus | 55.74 | 55.56 |
| PGSC0003DMT400008569 | Potato | nucleus | 57.7 | 55.0 |
| Solyc04g078420.1.1 | Tomato | nucleus | 59.02 | 54.88 |
| CDX72621 | Canola | nucleus | 46.89 | 53.96 |
| Bra010593.1-P | Field mustard | nucleus | 53.77 | 53.77 |
| CDY29542 | Canola | nucleus | 46.56 | 53.58 |
| Bra017813.1-P | Field mustard | nucleus | 46.56 | 53.58 |
| CDY38933 | Canola | nucleus | 51.15 | 53.42 |
| Bra032176.1-P | Field mustard | nucleus | 51.15 | 53.42 |
| Zm00001d005300_P001 | Maize | nucleus | 49.84 | 53.33 |
| CDX89554 | Canola | nucleus | 51.15 | 53.24 |
| Os09t0106700-01 | Rice | nucleus | 55.41 | 52.98 |
| Bra011749.1-P | Field mustard | nucleus | 56.07 | 52.13 |
| Solyc02g092930.1.1 | Tomato | nucleus | 60.98 | 51.52 |
| AT4G37260.1 | Thale cress | nucleus | 53.77 | 51.25 |
| PGSC0003DMT400064306 | Potato | mitochondrion, nucleus | 61.64 | 50.67 |
| AT2G23290.1 | Thale cress | nucleus | 50.82 | 50.16 |
| KRH37830 | Soybean | nucleus | 22.95 | 49.3 |
| TraesCS5A01G159600.1 | Wheat | nucleus | 53.44 | 48.51 |
| TraesCS5B01G157300.1 | Wheat | nucleus | 52.79 | 48.06 |
| Zm00001d019712_P001 | Maize | nucleus | 53.44 | 47.25 |
| TraesCS5D01G164600.1 | Wheat | nucleus | 53.11 | 47.23 |
| KRH61246 | Soybean | nucleus | 31.8 | 46.19 |
| KRH51945 | Soybean | nucleus | 33.11 | 45.7 |
| EER98550 | Sorghum | nucleus | 54.43 | 45.36 |
| KRH14928 | Soybean | nucleus | 33.44 | 42.86 |
| KRH73284 | Soybean | nucleus | 33.77 | 41.7 |
| KRH05732 | Soybean | nucleus | 30.82 | 38.06 |
| HORVU5Hr1G049880.1 | Barley | plastid | 51.8 | 37.26 |
| KRH75766 | Soybean | nucleus | 36.07 | 31.43 |
| KRG88785 | Soybean | nucleus | 36.07 | 31.25 |
| KRG94450 | Soybean | nucleus | 14.75 | 28.48 |
| KRH38975 | Soybean | nucleus | 21.64 | 27.85 |
| KRH09502 | Soybean | nucleus | 21.31 | 27.78 |
| KRH15916 | Soybean | nucleus | 20.66 | 26.03 |
| KRH15016 | Soybean | nucleus | 32.46 | 25.19 |
| KRH73115 | Soybean | nucleus | 29.84 | 22.81 |
| KRH64569 | Soybean | nucleus | 24.92 | 22.49 |
| KRH53362 | Soybean | nucleus | 24.26 | 22.36 |
| KRG94926 | Soybean | nucleus | 24.59 | 19.84 |
| KRH64970 | Soybean | nucleus | 24.26 | 18.27 |
| KRH50566 | Soybean | nucleus | 23.28 | 16.28 |
| KRH74887 | Soybean | plastid | 23.93 | 15.7 |
| KRH70748 | Soybean | nucleus | 23.93 | 15.63 |
| KRG89586 | Soybean | nucleus | 22.3 | 13.99 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:780556 | EMBL:ACUP02000655 | EMBL:DQ822911 | EnsemblPlantsGene:GLYMA_01G190100 |
| GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 |
| GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | EnsemblPlants:KRH77058 | ProteinID:KRH77058 |
| ProteinID:KRH77058.1 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF940 |
| UniProt:Q0PJJ1 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0000DBD8B3 | SEG:seg |
Description
hypothetical protein
Coordinates
chr1:+:52499934..52502300
Molecular Weight (calculated)
33369.7 Da
IEP (calculated)
9.315
GRAVY (calculated)
-0.495
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRIKGPWSP EEDEALQKLV EKHGPRNWSL ISKSIPGRSG KSCRLRWCNQ LSPQVEHRAF THEEDDTIIR AHARFGNKWA TIARLLHGRT DNAIKNHWNS
101: TLKRKCTSTM IDDDNTPPLK RSLSAGAAIP VSTGLYMNPP TPGSPSGSDV SESSVLVASS SHVFRPVPRT GAVLPPVETT TTLSSNDPPT SLSLSLPGVD
201: SSEVSNRTTE PIHAAPPPPP QPQPQPLNTI PLLPMMTVPS VSPTGMAPFN FSAEFLAVMQ EMIRKEVRSY MELHNQKNGM CFQAAVNDGF RNASVKRIGI
301: SRVDS
101: TLKRKCTSTM IDDDNTPPLK RSLSAGAAIP VSTGLYMNPP TPGSPSGSDV SESSVLVASS SHVFRPVPRT GAVLPPVETT TTLSSNDPPT SLSLSLPGVD
201: SSEVSNRTTE PIHAAPPPPP QPQPQPLNTI PLLPMMTVPS VSPTGMAPFN FSAEFLAVMQ EMIRKEVRSY MELHNQKNGM CFQAAVNDGF RNASVKRIGI
301: SRVDS
001: MADRIKGPWS PEEDEQLRRL VVKYGPRNWT VISKSIPGRS GKSCRLRWCN QLSPQVEHRP FSAEEDETIA RAHAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCGGY DHRGYDGSED HRPVKRSVSA GSPPVVTGLY MSPGSPTGSD VSDSSTIPIL PSVELFKPVP RPGAVVLPLP IETSSSSDDP PTSLSLSLPG
201: ADVSEESNRS HESTNINNTT SSRHNHNNTV SFMPFSGGFR GAIEEMGKSF PGNGGEFMAV VQEMIKAEVR SYMTEMQRNN GGGFVGGFID NGMIPMSQIG
301: VGRIE
101: STLKRKCGGY DHRGYDGSED HRPVKRSVSA GSPPVVTGLY MSPGSPTGSD VSDSSTIPIL PSVELFKPVP RPGAVVLPLP IETSSSSDDP PTSLSLSLPG
201: ADVSEESNRS HESTNINNTT SSRHNHNNTV SFMPFSGGFR GAIEEMGKSF PGNGGEFMAV VQEMIKAEVR SYMTEMQRNN GGGFVGGFID NGMIPMSQIG
301: VGRIE
Arabidopsis Description
MYB44MYBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQ74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.