CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02575
KRH06026
KRH09813
KRH09878
KRH12587
KRH19355
KRH23441
KRH23504
KRH26266
KRH37536
KRH44390
KRH47514
KRH51289

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50060.1	KRH06026	AT1G59750.1	17675404
AT3G50060.1	KRH26266	AT1G59750.1	17675404
AT3G50060.1	KRH51289	AT1G59750.1	17675404
AT3G50060.1	KRH09813	AT3G15540.1	17675404
AT3G50060.1	KRH23504	AT3G15540.1	17675404
AT3G50060.1	KRH44390	AT3G15540.1	17675404
AT3G50060.1	KRH47514	AT3G15540.1	17675404
AT3G50060.1	KRH09878	AT3G16120.1	21798944
AT3G50060.1	KRH23441	AT3G16120.1	21798944
AT3G50060.1	KRH02575	AT5G20730.1	17675404
AT3G50060.1	KRH12587	AT5G20730.1	17675404
AT3G50060.1	KRH19355	AT5G20730.1	17675404
AT3G50060.1	KRH37536	AT5G20730.1	17675404

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05621	Soybean	nucleus	62.16	60.07
KRH15420	Soybean	nucleus	61.39	58.24
CDY12830	Canola	nucleus	51.35	52.57
KRH28419	Soybean	nucleus	58.3	50.84
GSMUA_Achr4P20150_001	Banana	nucleus	52.51	50.56
CDY01420	Canola	nucleus	50.58	49.81
GSMUA_Achr4P12950_001	Banana	nucleus	50.58	49.25
KRH77058	Soybean	nucleus	57.92	49.18
KRH57983	Soybean	nucleus	55.98	49.15
Zm00001d005300_P001	Maize	nucleus	53.28	48.42
GSMUA_Achr9P22600_001	Banana	nucleus	53.28	47.92
GSMUA_Achr1P26140_001	Banana	nucleus	52.12	47.87
CDY30608	Canola	nucleus	48.65	47.55
AT5G67300.1	Thale cress	nucleus	55.98	47.54
Bra012149.1-P	Field mustard	nucleus	54.05	47.3
KRH37830	Soybean	nucleus	25.87	47.18
Os09t0106700-01	Rice	nucleus	57.92	47.02
Bra036048.1-P	Field mustard	nucleus	48.26	46.99
CDY23023	Canola	nucleus	52.12	46.55
GSMUA_Achr3P13070_001	Banana	nucleus	52.12	46.55
CDY57355	Canola	nucleus	49.81	46.4
Bra012910.1-P	Field mustard	nucleus	52.12	46.08
KRH61246	Soybean	nucleus	37.07	45.71
GSMUA_Achr8P25220_001	Banana	nucleus	52.12	45.61
GSMUA_Achr1P09750_001	Banana	nucleus	51.74	45.12
CDY02098	Canola	nucleus	50.97	45.05
GSMUA_Achr4P09450_001	Banana	nucleus	52.51	45.03
VIT_03s0180g00210.t01	Wine grape	nucleus	52.51	44.88
AT3G50060.1	Thale cress	nucleus	52.12	44.85
GSMUA_Achr3P28230_001	Banana	nucleus	49.81	44.79
KRH51945	Soybean	nucleus	37.84	44.34
GSMUA_AchrUn_...	Banana	nucleus	48.26	44.17
TraesCS5B01G157300.1	Wheat	nucleus	55.98	43.28
TraesCS5A01G159600.1	Wheat	nucleus	55.6	42.86
Zm00001d019712_P001	Maize	nucleus	56.76	42.61
TraesCS5D01G164600.1	Wheat	nucleus	55.98	42.27
KRH14928	Soybean	nucleus	38.61	42.02
Bra029990.1-P	Field mustard	nucleus	47.49	41.84
KRH73284	Soybean	nucleus	38.61	40.49
EER98550	Sorghum	nucleus	56.37	39.89
KRH05732	Soybean	nucleus	35.14	36.84
CDX68566	Canola	nucleus	41.31	34.08
HORVU5Hr1G049880.1	Barley	plastid	55.6	33.96
KRG94450	Soybean	nucleus	18.53	30.38
KRH09502	Soybean	nucleus	26.25	29.06
KRH38975	Soybean	nucleus	26.25	28.69
KRH75766	Soybean	nucleus	37.84	28.0
KRG88785	Soybean	nucleus	37.07	27.27
KRH15916	Soybean	nucleus	23.17	24.79
KRH15016	Soybean	nucleus	36.29	23.92
KRH53362	Soybean	nucleus	28.57	22.36
KRH64569	Soybean	nucleus	28.57	21.89
KRH73115	Soybean	nucleus	32.43	21.05
KRG94926	Soybean	nucleus	28.19	19.31
KRH64970	Soybean	nucleus	28.57	18.27
KRH50566	Soybean	nucleus	28.19	16.74
KRH74887	Soybean	plastid	27.8	15.48
KRH70748	Soybean	nucleus	27.8	15.42
KRG89586	Soybean	nucleus	27.41	14.61

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:778037	EMBL:ACUP02002162	EMBL:DQ822890	EnsemblPlantsGene:GLYMA_04G042300
GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EnsemblPlants:KRH61351	ProteinID:KRH61351
ProteinID:KRH61351.1	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF691
UniProt:Q0PJL2	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0000DBD89E	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:3404360..3405786

Molecular Weight (calculated)

28589.0 Da

IEP (calculated)

8.848

GRAVY (calculated)

-0.518

Length

259 amino acids

Sequence
(BLAST)

001: MDRIKGPWSP EEDEALRRLV QTYGPRNWSV ISKSIPGRSG KSCRLRWCNQ LSPEVERRPF TAEEDEAILK AHARFGNKWA TIARFLNGRT DNAIKNHWNS
101: TLKRKCSEPL SEPRPLKRSA TVSGSQSGSD LSDSGLPIIL ARSVSVTVAP SNHLAETASS SVTDPATLLS LSLPGFDSCD GANNGPGPNQ GPSCGPFQEI
201: PMLGSQKQLF SQEFMKVMQE MIRVEVRNYM SVLERNGVCM QTDAIRNSVL ERMGIGRVE

Best Arabidopsis Sequence Match ( AT4G37260.1 )
(BLAST)

001: MSNPTRKNME RIKGPWSPEE DDLLQRLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRAFSQ EEDETIIRAH ARFGNKWATI SRLLNGRTDN
101: AIKNHWNSTL KRKCSVEGQS CDFGGNGGYD GNLGEEQPLK RTASGGGGVS TGLYMSPGSP SGSDVSEQSS GGAHVFKPTV RSEVTASSSG EDPPTYLSLS
201: LPWTDETVRV NEPVQLNQNT VMDGGYTAEL FPVRKEEQVE VEEEEAKGIS GGFGGEFMTV VQEMIRTEVR SYMADLQRGN VGGSSSGGGG GGSCMPQSVN
301: SRRVGFREFI VNQIGIGKME

Arabidopsis Description

MYB73MYB73 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.