CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05621
KRH06026
KRH06451
KRH15420
KRH22880
KRH25023
KRH26266
KRH26435
KRH29907
KRH47893
KRH51289
KRH61351
KRH68924

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59750.1	KRH06026	AT1G59750.1	22096563
AT1G59750.1	KRH26266	AT1G59750.1	22096563
AT1G59750.1	KRH51289	AT1G59750.1	22096563
AT1G59750.1	KRH06026	AT1G59750.1	24485461
AT1G59750.1	KRH26266	AT1G59750.1	24485461
AT1G59750.1	KRH51289	AT1G59750.1	24485461
AT1G59750.1	KRH22880	AT2G28350.1	22096563
AT1G59750.1	KRH25023	AT2G28350.1	22096563
AT1G59750.1	KRH26435	AT2G28350.1	22096563
AT1G59750.1	KRH29907	AT2G28350.1	22096563
AT1G59750.1	KRH05621	AT3G50060.1	17675404
AT1G59750.1	KRH15420	AT3G50060.1	17675404
AT1G59750.1	KRH61351	AT3G50060.1	17675404
AT1G59750.1	KRH06451	AT3G61830.1	22096563
AT1G59750.1	KRH47893	AT3G61830.1	22096563
AT1G59750.1	KRH68924	AT3G61830.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26266	Soybean	nucleus	85.76	86.92
KRH06026	Soybean	nucleus	84.87	86.02
VIT_12s0035g01800.t01	Wine grape	nucleus	77.3	76.84
Solyc01g103050.2.1	Tomato	nucleus	70.47	72.63
PGSC0003DMT400053380	Potato	nucleus	70.18	72.32
CDY27291	Canola	nucleus	64.54	70.27
AT1G59750.1	Thale cress	nucleus	68.55	69.47
CDY65065	Canola	nucleus	67.36	68.68
Bra035427.1-P	Field mustard	nucleus	67.66	68.57
CDY33603	Canola	nucleus	67.21	68.53
GSMUA_Achr9P08310_001	Banana	vacuole	48.22	66.74
GSMUA_Achr10P...	Banana	nucleus	65.28	65.28
Os02t0557200-01	Rice	nucleus	63.95	63.57
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	65.73	63.56
GSMUA_Achr6P12780_001	Banana	nucleus	65.43	63.36
Zm00001d050781_P001	Maize	nucleus	59.05	63.17
EES06968	Sorghum	nucleus	62.76	62.95
GSMUA_Achr6P07390_001	Banana	nucleus	61.13	62.9
Os04t0442000-01	Rice	nucleus	61.72	61.81
TraesCS2B01G326400.1	Wheat	nucleus	59.5	61.31
TraesCS2A01G309300.1	Wheat	nucleus	59.5	61.31
TraesCS2D01G307600.1	Wheat	nucleus	59.2	61.01
EES10850	Sorghum	nucleus	59.79	60.97
Zm00001d016838_P001	Maize	nucleus	63.5	60.88
HORVU2Hr1G076920.3	Barley	nucleus	59.5	60.03
Zm00001d003601_P006	Maize	nucleus	59.35	58.65
KRH58711	Soybean	nucleus	29.82	51.15
KRH49135	Soybean	nucleus	49.41	50.15
KRH00001	Soybean	nucleus	49.26	50.0
KRH68924	Soybean	nucleus	48.81	49.7
KRH75716	Soybean	nucleus	50.0	48.7
KRH65922	Soybean	nucleus	49.26	48.05
KRH06451	Soybean	nucleus	48.81	45.95
KRH47893	Soybean	nucleus	48.37	45.53
KRH22924	Soybean	nucleus	24.04	44.38
KRH41062	Soybean	nucleus	51.04	40.42
KRH59742	Soybean	nucleus	51.04	40.09
KRH54110	Soybean	nucleus	49.41	39.5
KRH63855	Soybean	nucleus	49.41	39.5
KRG96367	Soybean	nucleus	36.2	36.04
KRH68102	Soybean	nucleus	30.86	35.25
KRH24914	Soybean	nucleus	39.17	33.33
KRG89021	Soybean	nucleus	39.17	33.33
KRH26391	Soybean	nucleus	38.28	32.29
KRH17251	Soybean	nucleus	37.69	30.13
KRH72896	Soybean	nucleus	37.83	30.11
KRG98044	Soybean	nucleus	36.94	29.61
KRH30740	Soybean	nucleus	36.94	29.5
KRH73577	Soybean	nucleus	38.58	29.02
KRH14545	Soybean	nucleus	37.98	28.57
KRH21113	Soybean	nucleus	37.83	28.46
KRH11131	Soybean	nucleus	37.69	28.29
KRH42603	Soybean	nucleus	37.69	28.07
KRH17404	Soybean	nucleus	37.39	27.1
KRH05923	Soybean	nucleus	37.39	27.01
KRH60117	Soybean	nucleus	38.13	23.38
KRH19355	Soybean	nucleus	38.87	23.17
KRH37536	Soybean	nucleus	38.58	23.11
KRH12587	Soybean	nucleus	38.43	23.08
KRH02575	Soybean	nucleus	38.87	23.06
KRH41404	Soybean	nucleus	37.24	22.55
KRH49070	Soybean	nucleus	37.09	22.52
KRH74145	Soybean	nucleus	36.2	22.1

Protein Annotations

EntrezGene:100815450	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EMBL:ACUP02004733
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_07G272800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	UniProt:I1KNS1	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
EnsemblPlants:KRH51289	ProteinID:KRH51289	ProteinID:KRH51289.1	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF28	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI00023391DF	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:+:44495306..44503419

Molecular Weight (calculated)

75127.5 Da

IEP (calculated)

6.279

GRAVY (calculated)

-0.522

Length

674 amino acids

Sequence
(BLAST)

001: MASTLKSGGI HTGAINDDLY KELWHACAGP LVTLPREGER VYYFPQGHME QLEASMYEGL EQQMPSFNLP SKILCKVVNV HLRAEPETDE VYAQITLLPE
101: ADQSEVTSPD DPLPESPRVK IHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH GNEWHFRHIF RGQPKRHLLT TGWSVFVSSK
201: KLAAGDAFIF LRGENGELRV GVRRVMRQQS NVPSSVISSH SMHLGVLATA SHAIATGTLF SVFYKPRTSR SEFIVSVNKY LEVQSHKLSV GMRFKMRFEG
301: DEIPERRFSG TIVGVGDNKS SSVWPDSEWR SLKVQWDEPS SILRPDRVSS WELEPLVSTT LANSQPTQRN KRARPLILPS TMPDSSLQGI WKSSVESTSF
401: SYCDPQQGRG LYPSPKFNSS ATNFIGFSGN SSVGSPSNKS IYWSNRMENN LESISAIALK EAGEKRQGTG NGCRLFGIQL LENSNAEGNL QTVTLSGRVG
501: DDRSVPSLDA ESDQHSEPSN ANRSDIPSVS CDAEKSCLQS PQESQSKQIR SCTKVHMQGM AVGRAVDLTR FDGYEDLLRK LEDMFNIKTE LCGSLKKWQV
601: VYTDNEDDMM MVGDDPWDEF CSVVRKIFIY TAEEVKKLSP KIRLPMNEKV NPSKQDSEAI VNPEDQSSNM GPSC

Best Arabidopsis Sequence Match ( AT1G59750.4 )
(BLAST)

001: MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSDGV WKSPADTPSS
401: VPLFSPPAKA ATFGHGGNKS FGVSIGSAFW PTNADSAAES FASAFNNEST EKKQTNGNVC RLFGFELVEN VNVDECFSAA SVSGAVAVDQ PVPSNEFDSG
501: QQSEPLNINQ SDIPSGSGDP EKSSLRSPQE SQSRQIRSCT KVHMQGSAVG RAIDLTRSEC YEDLFKKLEE MFDIKGELLE STKKWQVVYT DDEDDMMMVG
601: DDPWNEFCGM VRKIFIYTPE EVKKLSPKNK LAVNARMQLK ADAEENGNTE GRSSSMAGSR

Arabidopsis Description

ARF1Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.