Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH26266 | Soybean | nucleus | 96.54 | 96.54 |
KRH51289 | Soybean | nucleus | 86.02 | 84.87 |
VIT_12s0035g01800.t01 | Wine grape | nucleus | 79.55 | 78.02 |
Solyc01g103050.2.1 | Tomato | nucleus | 72.63 | 73.85 |
PGSC0003DMT400053380 | Potato | nucleus | 72.63 | 73.85 |
CDY27291 | Canola | nucleus | 66.17 | 71.08 |
AT1G59750.1 | Thale cress | nucleus | 70.53 | 70.53 |
Bra035427.1-P | Field mustard | nucleus | 69.77 | 69.77 |
CDY65065 | Canola | nucleus | 69.32 | 69.74 |
CDY33603 | Canola | nucleus | 69.17 | 69.59 |
GSMUA_Achr9P08310_001 | Banana | vacuole | 50.08 | 68.38 |
GSMUA_Achr10P... | Banana | nucleus | 67.37 | 66.47 |
GSMUA_Achr6P12780_001 | Banana | nucleus | 68.12 | 65.09 |
GSMUA_Achr6P29070_001 | Banana | nucleus, vacuole | 67.82 | 64.71 |
EES06968 | Sorghum | nucleus | 65.26 | 64.58 |
Zm00001d050781_P001 | Maize | nucleus | 61.05 | 64.44 |
Os02t0557200-01 | Rice | nucleus | 65.41 | 64.16 |
Os04t0442000-01 | Rice | nucleus | 64.66 | 63.89 |
GSMUA_Achr6P07390_001 | Banana | nucleus | 62.86 | 63.82 |
TraesCS2B01G326400.1 | Wheat | nucleus | 61.5 | 62.54 |
EES10850 | Sorghum | nucleus | 62.11 | 62.48 |
TraesCS2A01G309300.1 | Wheat | nucleus | 61.35 | 62.39 |
TraesCS2D01G307600.1 | Wheat | nucleus | 61.2 | 62.23 |
Zm00001d016838_P001 | Maize | nucleus | 65.71 | 62.16 |
HORVU2Hr1G076920.3 | Barley | nucleus | 61.2 | 60.93 |
Zm00001d003601_P006 | Maize | nucleus | 61.65 | 60.12 |
KRH00001 | Soybean | nucleus | 51.43 | 51.51 |
KRH49135 | Soybean | nucleus | 51.13 | 51.2 |
KRH58711 | Soybean | nucleus | 29.77 | 50.38 |
KRH68924 | Soybean | nucleus | 50.08 | 50.3 |
KRH65922 | Soybean | nucleus | 52.03 | 50.07 |
KRH75716 | Soybean | nucleus | 52.03 | 50.0 |
KRH06451 | Soybean | nucleus | 49.92 | 46.37 |
KRH47893 | Soybean | nucleus | 49.77 | 46.23 |
KRH22924 | Soybean | nucleus | 24.66 | 44.93 |
KRH41062 | Soybean | nucleus | 52.18 | 40.78 |
KRH59742 | Soybean | nucleus | 52.18 | 40.44 |
KRH54110 | Soybean | nucleus | 50.98 | 40.21 |
KRH63855 | Soybean | nucleus | 50.83 | 40.09 |
KRG96367 | Soybean | nucleus | 37.44 | 36.78 |
KRH68102 | Soybean | nucleus | 32.33 | 36.44 |
KRH24914 | Soybean | nucleus | 40.9 | 34.34 |
KRG89021 | Soybean | nucleus | 40.6 | 34.09 |
KRH26391 | Soybean | nucleus | 39.55 | 32.92 |
KRH17251 | Soybean | nucleus | 37.59 | 29.66 |
KRH72896 | Soybean | nucleus | 37.74 | 29.63 |
KRG98044 | Soybean | nucleus | 37.14 | 29.37 |
KRH30740 | Soybean | nucleus | 37.14 | 29.27 |
KRH73577 | Soybean | nucleus | 39.25 | 29.13 |
KRH14545 | Soybean | nucleus | 38.65 | 28.68 |
KRH21113 | Soybean | nucleus | 38.35 | 28.46 |
KRH11131 | Soybean | nucleus | 38.2 | 28.29 |
KRH42603 | Soybean | nucleus | 38.05 | 27.96 |
KRH17404 | Soybean | nucleus | 37.44 | 26.77 |
KRH05923 | Soybean | nucleus | 37.44 | 26.69 |
KRH60117 | Soybean | nucleus | 38.35 | 23.2 |
KRH37536 | Soybean | nucleus | 39.1 | 23.11 |
KRH12587 | Soybean | nucleus | 38.8 | 22.99 |
KRH02575 | Soybean | nucleus | 39.1 | 22.89 |
KRH19355 | Soybean | nucleus | 38.8 | 22.81 |
KRH49070 | Soybean | nucleus | 37.74 | 22.61 |
KRH41404 | Soybean | nucleus | 37.59 | 22.46 |
KRH74145 | Soybean | nucleus | 37.14 | 22.37 |
Protein Annotations
EntrezGene:100819023 | MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | EMBL:ACUP02009814 |
InterPro:AUX/IAA_dom | InterPro:Auxin_resp | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | EnsemblPlantsGene:GLYMA_16G000300 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 |
GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 |
GO:GO:0009734 | GO:GO:0009987 | UniProt:I1MJS6 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 |
EnsemblPlants:KRH06026 | ProteinID:KRH06026 | ProteinID:KRH06026.1 | InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 |
PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF28 | SMART:SM01019 |
SUPFAM:SSF101936 | SUPFAM:SSF54277 | UniParc:UPI000233B355 | : | : | : |
Description
hypothetical protein
Coordinates
chr16:-:25179..31940
Molecular Weight (calculated)
74197.3 Da
IEP (calculated)
5.807
GRAVY (calculated)
-0.494
Length
665 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAAPGATN DALYKELWHA CAGPLVTLPR EGERVYYFPQ GHMEQLEASM NQGLEQQMPS FNLPSKILCK VVNVHLRAEP ETDEVYAQIT LLPEADQSEV
101: TSPDDPLPES PRCTVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMT QQPPWQELVA TDLHGNEWHF RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD
201: AFIFLRGENG ELRVGVRRLM RQHSNMPSSV ISSHSMHLGV LATASHAIAT GTLFSVFYKP RTSRSEFIVS VNKYLEAQSH KLSVGMRFKM RFEGDEVPER
301: RFSGTIVGVE DNKSLVWADS EWRSLKVQWD EPSSILRPDR VSPWELEPLV SNPPTNSQPS QRNKRSRPPI LPSTMLDSSL QGVWKSPVES APFSYRDHQH
401: GRDVYPSTNF NSTATGFLGF GGNCSASNKS IYWSSRIENS TESFSPVAVK EFGEKRQGTA NGCRLFGIQL HDNSNSNEES LPMVSLSGRV GDDGLLPSLD
501: AESDQHSEPS NVNRSDFPSV SCDAEKSCLR SPQESQSRQI RSCTKVHMQG MAVGRAVDLT RFDGYEDLLR KLEEMFDING ELCGSTKEWQ VVYTDNEDDM
601: MMVGDDPWLE FCSIVRKIFI YTAEEVKKLS PKIGLPISEE VKPCKMDSEA VVNPGDQSSI LGPGC
101: TSPDDPLPES PRCTVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMT QQPPWQELVA TDLHGNEWHF RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD
201: AFIFLRGENG ELRVGVRRLM RQHSNMPSSV ISSHSMHLGV LATASHAIAT GTLFSVFYKP RTSRSEFIVS VNKYLEAQSH KLSVGMRFKM RFEGDEVPER
301: RFSGTIVGVE DNKSLVWADS EWRSLKVQWD EPSSILRPDR VSPWELEPLV SNPPTNSQPS QRNKRSRPPI LPSTMLDSSL QGVWKSPVES APFSYRDHQH
401: GRDVYPSTNF NSTATGFLGF GGNCSASNKS IYWSSRIENS TESFSPVAVK EFGEKRQGTA NGCRLFGIQL HDNSNSNEES LPMVSLSGRV GDDGLLPSLD
501: AESDQHSEPS NVNRSDFPSV SCDAEKSCLR SPQESQSRQI RSCTKVHMQG MAVGRAVDLT RFDGYEDLLR KLEEMFDING ELCGSTKEWQ VVYTDNEDDM
601: MMVGDDPWLE FCSIVRKIFI YTAEEVKKLS PKIGLPISEE VKPCKMDSEA VVNPGDQSSI LGPGC
001: MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSDGV WKSPADTPSS
401: VPLFSPPAKA ATFGHGGNKS FGVSIGSAFW PTNADSAAES FASAFNNEST EKKQTNGNVC RLFGFELVEN VNVDECFSAA SVSGAVAVDQ PVPSNEFDSG
501: QQSEPLNINQ SDIPSGSGDP EKSSLRSPQE SQSRQIRSCT KVHMQGSAVG RAIDLTRSEC YEDLFKKLEE MFDIKGELLE STKKWQVVYT DDEDDMMMVG
601: DDPWNEFCGM VRKIFIYTPE EVKKLSPKNK LAVNARMQLK ADAEENGNTE GRSSSMAGSR
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSDGV WKSPADTPSS
401: VPLFSPPAKA ATFGHGGNKS FGVSIGSAFW PTNADSAAES FASAFNNEST EKKQTNGNVC RLFGFELVEN VNVDECFSAA SVSGAVAVDQ PVPSNEFDSG
501: QQSEPLNINQ SDIPSGSGDP EKSSLRSPQE SQSRQIRSCT KVHMQGSAVG RAIDLTRSEC YEDLFKKLEE MFDIKGELLE STKKWQVVYT DDEDDMMMVG
601: DDPWNEFCGM VRKIFIYTPE EVKKLSPKNK LAVNARMQLK ADAEENGNTE GRSSSMAGSR
Arabidopsis Description
ARF1Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.