CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05621
KRH06026
KRH06451
KRH15420
KRH22880
KRH25023
KRH26266
KRH26435
KRH29907
KRH47893
KRH51289
KRH61351
KRH68924

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59750.1	KRH06026	AT1G59750.1	22096563
AT1G59750.1	KRH26266	AT1G59750.1	22096563
AT1G59750.1	KRH51289	AT1G59750.1	22096563
AT1G59750.1	KRH06026	AT1G59750.1	24485461
AT1G59750.1	KRH26266	AT1G59750.1	24485461
AT1G59750.1	KRH51289	AT1G59750.1	24485461
AT1G59750.1	KRH22880	AT2G28350.1	22096563
AT1G59750.1	KRH25023	AT2G28350.1	22096563
AT1G59750.1	KRH26435	AT2G28350.1	22096563
AT1G59750.1	KRH29907	AT2G28350.1	22096563
AT1G59750.1	KRH05621	AT3G50060.1	17675404
AT1G59750.1	KRH15420	AT3G50060.1	17675404
AT1G59750.1	KRH61351	AT3G50060.1	17675404
AT1G59750.1	KRH06451	AT3G61830.1	22096563
AT1G59750.1	KRH47893	AT3G61830.1	22096563
AT1G59750.1	KRH68924	AT3G61830.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06026	Soybean	nucleus	96.54	96.54
KRH51289	Soybean	nucleus	86.92	85.76
VIT_12s0035g01800.t01	Wine grape	nucleus	80.6	79.06
PGSC0003DMT400053380	Potato	nucleus	73.38	74.62
Solyc01g103050.2.1	Tomato	nucleus	73.23	74.46
CDY27291	Canola	nucleus	66.47	71.41
AT1G59750.1	Thale cress	nucleus	71.13	71.13
Bra035427.1-P	Field mustard	nucleus	70.08	70.08
CDY65065	Canola	nucleus	69.62	70.05
CDY33603	Canola	nucleus	69.47	69.89
GSMUA_Achr9P08310_001	Banana	vacuole	50.08	68.38
GSMUA_Achr10P...	Banana	nucleus	67.52	66.62
EES06968	Sorghum	nucleus	66.17	65.48
GSMUA_Achr6P12780_001	Banana	nucleus	68.42	65.37
Zm00001d050781_P001	Maize	nucleus	61.8	65.24
Os02t0557200-01	Rice	nucleus	66.02	64.75
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	67.82	64.71
GSMUA_Achr6P07390_001	Banana	nucleus	63.31	64.27
Os04t0442000-01	Rice	nucleus	64.96	64.19
TraesCS2B01G326400.1	Wheat	nucleus	62.11	63.15
Zm00001d016838_P001	Maize	nucleus	66.62	63.02
TraesCS2A01G309300.1	Wheat	nucleus	61.95	63.0
EES10850	Sorghum	nucleus	62.56	62.93
TraesCS2D01G307600.1	Wheat	nucleus	61.8	62.84
HORVU2Hr1G076920.3	Barley	nucleus	61.95	61.68
Zm00001d003601_P006	Maize	nucleus	62.11	60.56
KRH00001	Soybean	nucleus	51.28	51.36
KRH58711	Soybean	nucleus	30.23	51.15
KRH49135	Soybean	nucleus	50.98	51.05
KRH68924	Soybean	nucleus	50.08	50.3
KRH65922	Soybean	nucleus	51.73	49.78
KRH75716	Soybean	nucleus	51.58	49.57
KRH06451	Soybean	nucleus	49.92	46.37
KRH47893	Soybean	nucleus	49.77	46.23
KRH22924	Soybean	nucleus	24.66	44.93
KRH41062	Soybean	nucleus	52.18	40.78
KRH59742	Soybean	nucleus	52.18	40.44
KRH54110	Soybean	nucleus	50.98	40.21
KRH63855	Soybean	nucleus	50.83	40.09
KRG96367	Soybean	nucleus	36.99	36.34
KRH68102	Soybean	nucleus	31.88	35.93
KRH24914	Soybean	nucleus	40.75	34.22
KRG89021	Soybean	nucleus	40.45	33.96
KRH26391	Soybean	nucleus	39.4	32.79
KRH17251	Soybean	nucleus	37.74	29.77
KRH72896	Soybean	nucleus	37.89	29.75
KRG98044	Soybean	nucleus	36.99	29.25
KRH30740	Soybean	nucleus	36.99	29.15
KRH73577	Soybean	nucleus	39.25	29.13
KRH14545	Soybean	nucleus	38.65	28.68
KRH21113	Soybean	nucleus	38.35	28.46
KRH11131	Soybean	nucleus	38.2	28.29
KRH42603	Soybean	nucleus	38.05	27.96
KRH17404	Soybean	nucleus	37.29	26.67
KRH05923	Soybean	nucleus	37.29	26.58
KRH60117	Soybean	nucleus	38.35	23.2
KRH37536	Soybean	nucleus	38.95	23.02
KRH12587	Soybean	nucleus	38.8	22.99
KRH02575	Soybean	nucleus	39.1	22.89
KRH19355	Soybean	nucleus	38.8	22.81
KRH49070	Soybean	nucleus	37.89	22.7
KRH41404	Soybean	nucleus	37.74	22.55
KRH74145	Soybean	nucleus	37.29	22.46

Protein Annotations

EntrezGene:100793224	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EMBL:ACUP02007703
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_12G164100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	UniProt:I1LT90	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
EnsemblPlants:KRH26266	ProteinID:KRH26266	ProteinID:KRH26266.1	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF28	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000233D191	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:31863013..31869597

Molecular Weight (calculated)

74277.5 Da

IEP (calculated)

6.027

GRAVY (calculated)

-0.523

Length

665 amino acids

Sequence
(BLAST)

001: MASAAPGATN DALYKELWHA CAGPLVTLPR EGERVYYFPQ GHMEQLEASM NQGLEQQMPS FNLPSKILCK VVNVHLRAEP ETDEVYAQIT LLPEADQSEV
101: TSPDDPLPES PRCTVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMT QQPPWQELVA TDLHGNEWHF RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD
201: AFIFLRGENG ELRVGVRRLM RQQSNMPSSV ISSHSMHLGV LATASHAIAT GTLFSVFYKP RTSRSEFIVS VNKYLEARSH KLSVGMRFKM RFEGDEVPER
301: RFSGTIVGVG DNKSSVWADS EWRSLKVQWD EPSSILRPDR VSPWELEPLV STPPTNPQPS QRNKRSRPPI LPSTMPDSSL QGVWKSPVES APFSYCDHQH
401: GRDVYPSTNF NSTATGFLGF GGNCYASNKS IYWSSRMENS TESFSPVALK EFGEKRQGTA NGCRLFRIQL HDNSNSNEES LPMVTLSGRM GDDGPLPSLD
501: AESDQHSEPS NVNRSDIPSV SCDAEKSCLR SPQESQSRQI RSCTKVHMQG MAVGRAVDLT RFDGYEDLLR KLEEMFDITG ELCGSTKKWQ VVYTDNEDDM
601: MMVGDDPWLE FCSIVRKIFI YTAEEVRKLS PKIGLPISEE VKPSKMDSEA VANPEDQSSI VGPGC

Best Arabidopsis Sequence Match ( AT1G59750.4 )
(BLAST)

001: MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSDGV WKSPADTPSS
401: VPLFSPPAKA ATFGHGGNKS FGVSIGSAFW PTNADSAAES FASAFNNEST EKKQTNGNVC RLFGFELVEN VNVDECFSAA SVSGAVAVDQ PVPSNEFDSG
501: QQSEPLNINQ SDIPSGSGDP EKSSLRSPQE SQSRQIRSCT KVHMQGSAVG RAIDLTRSEC YEDLFKKLEE MFDIKGELLE STKKWQVVYT DDEDDMMMVG
601: DDPWNEFCGM VRKIFIYTPE EVKKLSPKNK LAVNARMQLK ADAEENGNTE GRSSSMAGSR

Arabidopsis Description

ARF1Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.