CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90903
KRH11042
KRH21245
KRH35895
KRH42881
KRH52380
KRH58985
KRH61707

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62000.1	KRG90903	AT1G15050.1	21734647
AT5G62000.1	KRH35895	AT1G15050.1	21734647
AT5G62000.1	KRH11042	AT4G18710.1	18599455
AT5G62000.1	KRH21245	AT4G18710.1	18599455
AT5G62000.1	KRH42881	AT4G18710.1	18599455
AT5G62000.1	KRH52380	AT4G18710.1	18599455
AT5G62000.1	KRH58985	AT4G18710.1	18599455
AT5G62000.1	KRH61707	AT4G18710.1	18599455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59742	Soybean	nucleus	94.71	93.94
KRH63855	Soybean	nucleus	79.67	80.43
KRH54110	Soybean	nucleus	79.55	80.31
Os11t0523800-01	Rice	nucleus	32.78	76.23
VIT_17s0000g00320.t01	Wine grape	nucleus	73.68	72.74
PGSC0003DMT400037454	Potato	nucleus	65.22	66.95
Solyc12g042070.1.1	Tomato	nucleus	64.75	66.55
AT5G62000.1	Thale cress	nucleus	66.04	65.42
PGSC0003DMT400036765	Potato	nucleus	64.51	64.97
Solyc03g118290.2.1	Tomato	nucleus	64.28	64.66
CDX86939	Canola	nucleus	64.51	64.59
Bra010048.1-P	Field mustard	nucleus	64.28	64.28
CDY00245	Canola	nucleus	64.28	64.28
CDX87230	Canola	nucleus	62.51	64.25
CDY67247	Canola	nucleus	64.16	64.16
GSMUA_Achr6P08090_001	Banana	nucleus	60.63	62.62
Bra035910.1-P	Field mustard	nucleus	63.22	60.59
CDY16798	Canola	nucleus	61.93	60.09
GSMUA_Achr10P...	Banana	nucleus	58.17	60.07
GSMUA_Achr6P16450_001	Banana	nucleus	59.34	57.85
TraesCS3D01G434700.1	Wheat	nucleus	52.06	55.65
TraesCS3B01G475800.1	Wheat	nucleus	51.94	55.53
OQU83539	Sorghum	nucleus	53.11	55.46
TraesCS3A01G442000.1	Wheat	nucleus	51.94	55.46
GSMUA_AchrUn_...	Banana	nucleus	57.58	55.43
Os01t0927600-01	Rice	nucleus	51.59	54.33
KXG34038	Sorghum	nucleus	51.35	53.95
Os12t0479400-02	Rice	nucleus	53.23	53.86
Zm00001d011953_P002	Maize	nucleus	51.0	53.85
Zm00001d042267_P003	Maize	nucleus	50.65	52.69
KRH06026	Soybean	nucleus	40.78	52.18
KRH26266	Soybean	nucleus	40.78	52.18
Zm00001d049295_P001	Maize	nucleus	52.88	51.37
TraesCS3B01G486000.2	Wheat	nucleus	49.71	51.21
KRH58711	Soybean	nucleus	23.62	51.15
KRH51289	Soybean	nucleus	40.42	51.04
TraesCS3A01G449300.3	Wheat	nucleus	49.59	50.9
EES17013	Sorghum	nucleus	49.71	50.42
HORVU3Hr1G097200.10	Barley	nucleus	49.71	50.06
HORVU3Hr1G096410.4	Barley	nucleus, plastid	47.24	50.0
Zm00001d023659_P007	Maize	nucleus	47.71	49.15
Zm00001d041056_P019	Maize	nucleus	48.53	48.93
KRH00001	Soybean	nucleus	37.84	48.49
HORVU3Hr1G096510.3	Barley	plastid	47.36	48.32
KRH49135	Soybean	nucleus	37.6	48.19
KRH75716	Soybean	nucleus	39.13	48.12
TraesCS3D01G442000.7	Wheat	nucleus	50.06	48.08
KRH22924	Soybean	nucleus	20.33	47.4
KRH65922	Soybean	nucleus	38.43	47.32
KRH68924	Soybean	nucleus	36.08	46.37
KRH06451	Soybean	nucleus	38.66	45.95
KRH47893	Soybean	nucleus	38.07	45.25
KRH68102	Soybean	nucleus	28.08	40.51
KRG96367	Soybean	nucleus	31.96	40.18
KRG89021	Soybean	nucleus	34.55	37.12
KRH24914	Soybean	nucleus	34.43	36.99
KRH26391	Soybean	nucleus	33.84	36.05
KRH17251	Soybean	nucleus	31.96	32.27
KRG98044	Soybean	nucleus	31.73	32.1
KRH72896	Soybean	nucleus	31.73	31.88
KRH30740	Soybean	nucleus	31.61	31.87
KRH73577	Soybean	nucleus	32.9	31.25
KRH14545	Soybean	nucleus	32.43	30.8
KRH21113	Soybean	nucleus	32.2	30.58
KRH11131	Soybean	nucleus	32.08	30.4
KRH42603	Soybean	nucleus	31.84	29.94
KRH17404	Soybean	nucleus	30.32	27.74
KRH05923	Soybean	nucleus	30.08	27.44
KRH49070	Soybean	nucleus	32.2	24.68
KRH60117	Soybean	nucleus	31.73	24.57
KRH74145	Soybean	nucleus	31.61	24.37
KRH41404	Soybean	nucleus	31.84	24.35
KRH19355	Soybean	nucleus	32.31	24.31
KRH02575	Soybean	nucleus	32.43	24.3
KRH12587	Soybean	nucleus	31.26	23.71
KRH37536	Soybean	nucleus	31.26	23.64

Protein Annotations

EntrezGene:100780892	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EMBL:ACUP02004750
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_08G008100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	UniProt:I1KP28	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
EnsemblPlants:KRH41062	ProteinID:KRH41062	ProteinID:KRH41062.1	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF8	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0002337FA3	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:642605..648560

Molecular Weight (calculated)

94426.7 Da

IEP (calculated)

6.858

GRAVY (calculated)

-0.649

Length

851 amino acids

Sequence
(BLAST)

001: MATSEVSIKG NSVNGKGDNS SGDARNSGGE AQNASSSSSS ARDAEAALYR ELWHACAGPL VTVPRERERV FYFPQGHIEQ VEASTNQVAE QHMPVYDLPP
101: KILCRVINVM LKAEPDTDEV FAQVTLLPEP NQDENAVEKE GPPAPPPRFH VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSKQPP TQELVAKDLH
201: ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAILTGTMF TVYYKPRTSP
301: AEFIVPYDQY MESLKNNYTI GMRFKMRFEG EEAPEQRFTG TIVGIEDADT KRWPKSKWRS LKVRWDETSN IPRPERVSQW KIEPALAPLA LNPLPMPRPK
401: RPRSNVVPSS PDSSVLTREA SKVSVDPLPT SGFQRVLQGQ ELSTLRGNFA ESNESDTAEK SGVWPPATDD EKIDVSTSRR YGSDSWMSMG RHEPTYPDLL
501: SGFGAHGDHS SHPSFVDQNG PVANLSRKHL LDREGKHNVL SPWPGVPSSL SLNLLDSNLK GSAQGGDTAY QVRGNLRYSS AFGEYPVLHG HKVEHSHRSF
601: LMPPPPSTQY ESPRSRELLS KPISGKPCEV SKLKDSDCKL FGISLLSSRP IASEPSLSQR NVTSESVGHM HTASHHQRAI ENDQKSEHSR GSKPADGLLI
701: DDHEKVLQTS QPHLKDVQAK SHSGSARSCT KVHKKGIALG RSVDLTKFSD YGELITELDQ LFEFGGELTS PQKDWLIVYT DNEGDMMLVG DDPWQEFVAM
801: VRKIYIYPKE EIQKMSPGTL SSKNEENQSA SEGAADAQEI ECQLNHSSSD T

Best Arabidopsis Sequence Match ( AT5G62000.2 )
(BLAST)

001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS

Arabidopsis Description

ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.