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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 1
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
EES00093

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G62000.1 EES00093 AT4G18710.1 18599455
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d049295_P001 Maize nucleus 89.94 83.68
Os11t0523800-01 Rice nucleus 35.71 79.51
EES17013 Sorghum nucleus 63.31 61.5
GSMUA_Achr6P08090_001 Banana nucleus 60.49 59.83
GSMUA_Achr10P... Banana nucleus 58.16 57.52
VIT_01s0244g00150.t01 Wine grape nucleus 52.64 55.79
GSMUA_Achr6P16450_001 Banana nucleus 59.51 55.56
Solyc12g042070.1.1 Tomato nucleus 54.6 53.74
VIT_17s0000g00320.t01 Wine grape nucleus 56.81 53.71
PGSC0003DMT400037454 Potato nucleus 54.6 53.68
PGSC0003DMT400036765 Potato nucleus 55.46 53.49
KRH41062 Soybean nucleus 55.46 53.11
Solyc03g118290.2.1 Tomato nucleus 55.09 53.07
KRH59742 Soybean nucleus 55.58 52.8
GSMUA_AchrUn_... Banana nucleus 57.18 52.71
KRH54110 Soybean nucleus 54.48 52.67
KRH63855 Soybean nucleus 53.87 52.08
CDX87230 Canola nucleus 52.52 51.69
KXG34038 Sorghum nucleus 51.17 51.48
CDY67247 Canola nucleus 53.25 51.0
CDX86939 Canola nucleus 52.64 50.47
Bra010048.1-P Field mustard nucleus 52.39 50.18
CDY00245 Canola nucleus 52.39 50.18
AT5G62000.1 Thale cress nucleus 52.88 50.17
Bra035910.1-P Field mustard nucleus 52.76 48.42
CDY16798 Canola nucleus 51.9 48.23
EES10850 Sorghum nucleus 38.53 47.5
EES06968 Sorghum nucleus 38.9 47.17
EES02172 Sorghum nucleus 31.53 37.35
KXG27404 Sorghum nucleus 28.96 28.82
EES17392 Sorghum nucleus 30.8 28.04
EER90218 Sorghum nucleus 30.92 27.42
EES04575 Sorghum nucleus 30.55 27.33
EES13038 Sorghum nucleus 29.82 25.69
EER90336 Sorghum nucleus 32.64 22.95
EES15359 Sorghum nucleus 30.8 22.92
KXG19536 Sorghum nucleus 29.2 22.6
OQU84350 Sorghum nucleus 29.08 22.15
Protein Annotations
MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90UniProt:A0A1Z5RIW5InterPro:AUX/IAA_dom
InterPro:Auxin_respInterPro:B3_DNA-bdInterPro:DNA-bd_pseudobarrel_sfGO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0007154GO:GO:0007165GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009719GO:GO:0009725GO:GO:0009734GO:GO:0009987
InterPro:IPR000270InterPro:IPR003340InterPro:IPR015300EnsemblPlants:OQU83539ProteinID:OQU83539ProteinID:OQU83539.1
InterPro:PB1_domPFAM:PF02309PFAM:PF02362PFAM:PF06507PFscan:PS50863PFscan:PS51745
PANTHER:PTHR31384PANTHER:PTHR31384:SF40SMART:SM01019EnsemblPlantsGene:SORBI_3005G132000SUPFAM:SSF101936SUPFAM:SSF54277
UniParc:UPI000B8BABD8SEG:seg::::
Description
hypothetical protein
Coordinates
chr5:-:57386048..57393630
Molecular Weight (calculated)
90626.0 Da
IEP (calculated)
6.765
GRAVY (calculated)
-0.603
Length
815 amino acids
Sequence
(BLAST)
001: MYTELWSLCA GPLVTVPRVG DKVYYFPQGH IEQVEASTNQ VAEQHMQLYN LPWKILCEVM NVELKAEPDN DEVYAQLTLL PESKQPEENG SSQEEMPAAP
101: PAALARPRVH SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSRQPPTQ ELVAKDLHGV EWRFRHIFRG QPGRLFLQSG WSVFVSAKRL VAGDAFIFLR
201: GDNGELRVGV RRAMRQQANV PSSVISSHSM HLGVLATAWH AVNTGTMFTV YYKPRTSPAE FVVPCDRYTE SLKRNYPIGM RFKMRFEGEE APEQRFTGTI
301: VGNVDPEQAG WAESKWRYLK VRWDEASSIP RPERVSPWQI EPAVSPPPVN PLPVHRPKRP RSNAVASLAE SSAPTKEAAP KVTLETQQHA LQRPLQTQDN
401: AAPKSGFGDN SELDAAHKSA LRPSGFDLEK NTIGMQRKLG SDSWMHMNRP EGYNEMLSGY QQPNKDVQNP QGFCSLPDQI AAGRPNFWHT VNAHYQDQQG
501: NHNLFPGSWS MMPSSTGFGL NRQSYPMMQE VGGLSQSATN TKFGNGAYAA LPGHGIDQYS SGWFGHMIPG ARMDDVQPRV IKPQPLVLAH GEAQKMKGNS
601: CKLFGIHLDS PAKSEPLKSP PSVAYDGMPQ TPAAAEWRMV DSIEADRCSD PLKMPKQLDA TQVDPVPEKC SQVSRGTQCK SQGGSTRSCK KVHKQGIALG
701: RSVDLTKFNG YTELIAELDE MFDFNGELKG SNKEWMVVYT DNEGDMMLVG DDPWNEFCNM VHKIFIYTRE EVQRMNPGTL NSRSEDSLAN SMERGSTARE
801: TPGSLSASSL DSENC
Best Arabidopsis Sequence Match ( AT5G62000.2 )
(BLAST)
001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS
Arabidopsis Description
ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.