Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
EES00093 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G62000.1 | EES00093 | AT4G18710.1 | 18599455 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d049295_P001 | Maize | nucleus | 89.94 | 83.68 |
Os11t0523800-01 | Rice | nucleus | 35.71 | 79.51 |
EES17013 | Sorghum | nucleus | 63.31 | 61.5 |
GSMUA_Achr6P08090_001 | Banana | nucleus | 60.49 | 59.83 |
GSMUA_Achr10P... | Banana | nucleus | 58.16 | 57.52 |
VIT_01s0244g00150.t01 | Wine grape | nucleus | 52.64 | 55.79 |
GSMUA_Achr6P16450_001 | Banana | nucleus | 59.51 | 55.56 |
Solyc12g042070.1.1 | Tomato | nucleus | 54.6 | 53.74 |
VIT_17s0000g00320.t01 | Wine grape | nucleus | 56.81 | 53.71 |
PGSC0003DMT400037454 | Potato | nucleus | 54.6 | 53.68 |
PGSC0003DMT400036765 | Potato | nucleus | 55.46 | 53.49 |
KRH41062 | Soybean | nucleus | 55.46 | 53.11 |
Solyc03g118290.2.1 | Tomato | nucleus | 55.09 | 53.07 |
KRH59742 | Soybean | nucleus | 55.58 | 52.8 |
GSMUA_AchrUn_... | Banana | nucleus | 57.18 | 52.71 |
KRH54110 | Soybean | nucleus | 54.48 | 52.67 |
KRH63855 | Soybean | nucleus | 53.87 | 52.08 |
CDX87230 | Canola | nucleus | 52.52 | 51.69 |
KXG34038 | Sorghum | nucleus | 51.17 | 51.48 |
CDY67247 | Canola | nucleus | 53.25 | 51.0 |
CDX86939 | Canola | nucleus | 52.64 | 50.47 |
Bra010048.1-P | Field mustard | nucleus | 52.39 | 50.18 |
CDY00245 | Canola | nucleus | 52.39 | 50.18 |
AT5G62000.1 | Thale cress | nucleus | 52.88 | 50.17 |
Bra035910.1-P | Field mustard | nucleus | 52.76 | 48.42 |
CDY16798 | Canola | nucleus | 51.9 | 48.23 |
EES10850 | Sorghum | nucleus | 38.53 | 47.5 |
EES06968 | Sorghum | nucleus | 38.9 | 47.17 |
EES02172 | Sorghum | nucleus | 31.53 | 37.35 |
KXG27404 | Sorghum | nucleus | 28.96 | 28.82 |
EES17392 | Sorghum | nucleus | 30.8 | 28.04 |
EER90218 | Sorghum | nucleus | 30.92 | 27.42 |
EES04575 | Sorghum | nucleus | 30.55 | 27.33 |
EES13038 | Sorghum | nucleus | 29.82 | 25.69 |
EER90336 | Sorghum | nucleus | 32.64 | 22.95 |
EES15359 | Sorghum | nucleus | 30.8 | 22.92 |
KXG19536 | Sorghum | nucleus | 29.2 | 22.6 |
OQU84350 | Sorghum | nucleus | 29.08 | 22.15 |
Protein Annotations
MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | UniProt:A0A1Z5RIW5 | InterPro:AUX/IAA_dom |
InterPro:Auxin_resp | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 |
InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | EnsemblPlants:OQU83539 | ProteinID:OQU83539 | ProteinID:OQU83539.1 |
InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 |
PANTHER:PTHR31384 | PANTHER:PTHR31384:SF40 | SMART:SM01019 | EnsemblPlantsGene:SORBI_3005G132000 | SUPFAM:SSF101936 | SUPFAM:SSF54277 |
UniParc:UPI000B8BABD8 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr5:-:57386048..57393630
Molecular Weight (calculated)
90626.0 Da
IEP (calculated)
6.765
GRAVY (calculated)
-0.603
Length
815 amino acids
Sequence
(BLAST)
(BLAST)
001: MYTELWSLCA GPLVTVPRVG DKVYYFPQGH IEQVEASTNQ VAEQHMQLYN LPWKILCEVM NVELKAEPDN DEVYAQLTLL PESKQPEENG SSQEEMPAAP
101: PAALARPRVH SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSRQPPTQ ELVAKDLHGV EWRFRHIFRG QPGRLFLQSG WSVFVSAKRL VAGDAFIFLR
201: GDNGELRVGV RRAMRQQANV PSSVISSHSM HLGVLATAWH AVNTGTMFTV YYKPRTSPAE FVVPCDRYTE SLKRNYPIGM RFKMRFEGEE APEQRFTGTI
301: VGNVDPEQAG WAESKWRYLK VRWDEASSIP RPERVSPWQI EPAVSPPPVN PLPVHRPKRP RSNAVASLAE SSAPTKEAAP KVTLETQQHA LQRPLQTQDN
401: AAPKSGFGDN SELDAAHKSA LRPSGFDLEK NTIGMQRKLG SDSWMHMNRP EGYNEMLSGY QQPNKDVQNP QGFCSLPDQI AAGRPNFWHT VNAHYQDQQG
501: NHNLFPGSWS MMPSSTGFGL NRQSYPMMQE VGGLSQSATN TKFGNGAYAA LPGHGIDQYS SGWFGHMIPG ARMDDVQPRV IKPQPLVLAH GEAQKMKGNS
601: CKLFGIHLDS PAKSEPLKSP PSVAYDGMPQ TPAAAEWRMV DSIEADRCSD PLKMPKQLDA TQVDPVPEKC SQVSRGTQCK SQGGSTRSCK KVHKQGIALG
701: RSVDLTKFNG YTELIAELDE MFDFNGELKG SNKEWMVVYT DNEGDMMLVG DDPWNEFCNM VHKIFIYTRE EVQRMNPGTL NSRSEDSLAN SMERGSTARE
801: TPGSLSASSL DSENC
101: PAALARPRVH SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSRQPPTQ ELVAKDLHGV EWRFRHIFRG QPGRLFLQSG WSVFVSAKRL VAGDAFIFLR
201: GDNGELRVGV RRAMRQQANV PSSVISSHSM HLGVLATAWH AVNTGTMFTV YYKPRTSPAE FVVPCDRYTE SLKRNYPIGM RFKMRFEGEE APEQRFTGTI
301: VGNVDPEQAG WAESKWRYLK VRWDEASSIP RPERVSPWQI EPAVSPPPVN PLPVHRPKRP RSNAVASLAE SSAPTKEAAP KVTLETQQHA LQRPLQTQDN
401: AAPKSGFGDN SELDAAHKSA LRPSGFDLEK NTIGMQRKLG SDSWMHMNRP EGYNEMLSGY QQPNKDVQNP QGFCSLPDQI AAGRPNFWHT VNAHYQDQQG
501: NHNLFPGSWS MMPSSTGFGL NRQSYPMMQE VGGLSQSATN TKFGNGAYAA LPGHGIDQYS SGWFGHMIPG ARMDDVQPRV IKPQPLVLAH GEAQKMKGNS
601: CKLFGIHLDS PAKSEPLKSP PSVAYDGMPQ TPAAAEWRMV DSIEADRCSD PLKMPKQLDA TQVDPVPEKC SQVSRGTQCK SQGGSTRSCK KVHKQGIALG
701: RSVDLTKFNG YTELIAELDE MFDFNGELKG SNKEWMVVYT DNEGDMMLVG DDPWNEFCNM VHKIFIYTRE EVQRMNPGTL NSRSEDSLAN SMERGSTARE
801: TPGSLSASSL DSENC
001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS
Arabidopsis Description
ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.