CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031522_P007	Maize	nucleus	92.6	93.37
Os08t0520500-01	Rice	cytosol	3.84	84.0
Os08t0520550-01	Rice	nucleus	48.22	82.89
TraesCS7A01G252000.2	Wheat	nucleus	77.72	78.29
TraesCS7D01G250100.4	Wheat	nucleus	77.44	77.66
TraesCS7B01G138900.6	Wheat	nucleus	77.35	77.42
HORVU7Hr1G051930.4	Barley	nucleus	76.35	77.19
VIT_11s0065g00310.t01	Wine grape	nucleus	56.8	55.78
GSMUA_Achr6P01740_001	Banana	nucleus	50.68	53.42
OQU84350	Sorghum	nucleus	51.87	53.08
EER90336	Sorghum	nucleus	56.16	53.06
Solyc07g016180.2.1	Tomato	nucleus	53.61	52.79
PGSC0003DMT400025312	Potato	nucleus	53.33	52.42
PGSC0003DMT400035592	Potato	nucleus	51.69	51.6
KRH49070	Soybean	nucleus	52.15	51.44
Solyc05g047460.2.1	Tomato	nucleus	51.51	51.41
KRH74145	Soybean	nucleus	50.59	50.18
KRH60117	Soybean	nucleus	48.04	47.86
KRH41404	Soybean	nucleus	48.22	47.44
KXG19536	Sorghum	nucleus	42.1	43.78
KXG27404	Sorghum	nucleus	31.51	42.12
EES04575	Sorghum	nucleus	34.98	42.04
EER90218	Sorghum	nucleus	34.89	41.57
EES17392	Sorghum	nucleus	32.79	40.11
EES10850	Sorghum	nucleus	22.1	36.61
EES06968	Sorghum	nucleus	22.28	36.31
EES13038	Sorghum	nucleus	30.41	35.2
KXG34038	Sorghum	nucleus	24.2	32.72
EES02172	Sorghum	nucleus	19.45	30.96
OQU83539	Sorghum	nucleus	22.92	30.8
EES17013	Sorghum	nucleus	23.38	30.51

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:8081337	InterPro:AUX/IAA_dom
InterPro:Auxin_resp	InterPro:B3_DNA-bd	UniProt:C5YIB6	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlants:EES15359	ProteinID:EES15359
ProteinID:EES15359.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340
InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF18	SMART:SM01019	EnsemblPlantsGene:SORBI_3007G203500	SUPFAM:SSF101936
SUPFAM:SSF54277	unigene:Sbi.16858	UniParc:UPI0001A878CE	RefSeq:XP_002445864.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:-:63408040..63414690

Molecular Weight (calculated)

121255.0 Da

IEP (calculated)

6.543

GRAVY (calculated)

-0.455

Length

1095 amino acids

Sequence
(BLAST)

0001: MAAAAAPGTS SGGAGGDGGG GTKVNQELWY ACAGPLVTLP PAGSLVVYFP QGHSEQVAAS MRKDADAKIP SYPNLPSKLI CILRSVTMLA DPDTDEVYAR
0101: MTLQPVSNVT HCDKETLLAS DLALKQTRPQ TEFFCKTLTA SDTSTHGGFS VPRRAAERIF PHLDFSMQPP AQELQARDLH DAIWTFRHIY RGQPKRHLLT
0201: TGWSLFVSGK RLLAGDSVLF IRDGRQQLLL GIRRANRQPV NLSSSVLSSD SMHIGILAAA AHAAANNSQF TVFYNPRASP SEFVIPFAKY QKAVYSNQLS
0301: LGMRFRMMFE TEESATRRYM GTITGISDMD PVRWKNSQWR NIQVAWDEAA PTERRTRVSL WEVEPVIAPF FIYPSPLFTA KRPRQPGITD DDSSEMDTLF
0401: KRTMPWFGEE IGKKDLSTQN SLVPGLSLVQ WMNMQQTSSL TSTVMQPELL NSLAGKPVQT LAAADLSRQI SFQPQFLQQN NIQFNTSLLP PQNQQTEQLA
0501: NVIATPNQLG SVIVPQKVVP NCSSEQKQNP VTQPLQVSQP MISMAQPQLV HTQLQQPQVI LQAQPQQPQV IVQAQLQQQQ PLVQNHTTIQ GGLQQIQLLQ
0601: QQHPHLQQQQ VQQSVQEQQQ IKIQPFQVPN DANMVTQLSD QMKIQLLKAL QPQQPLVMDQ QKMILDLQQQ AVNSQSTAQQ CSQVATQVVG LHSSSTIQYP
0701: TQQKTQPHKT IQDFPGNAVS IVKSENVTSM GARSLHVPGG VQSMKTDEVP SSSTSPSTNN NPVILRSTPS SSKNQCLSTA TKAPQSSVVL GCTLEQGMKP
0801: YESTQHTMAI PKMAEERPAT GQDYMNSTQI EYLDTSSSAT SVCLSQADGS LQQNFPPSFN QHQTLRETVP DSEFEVTDPG TNFLFGANID GHMEPLNEDA
0901: LLGNTFETEK YMDQMPGNGI SNYISSKDAQ QELSSSVISH SFGVADIAFN SIDSSINDIP FLNRNSRAPG PAHQRIRTYT KVHKRGAVGR SIDINRYSGY
1001: DELKHDIARM FGIEGQLSDQ NRVCWKLVYE DHEKDVLLVG DDPWEDFVNC VRCIRILSPQ EERQMRLASD YGDSFLGNQA CSSSDGVHPW RVTGD

Best Arabidopsis Sequence Match ( AT1G19220.1 )
(BLAST)

0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR

Arabidopsis Description

ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.