CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90734
EER90896
EER93778
EER97080
EER98076
EES00605
EES16315
EES17334
KXG19391
KXG31308
OQU91311

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37020.1	EER90896	AT1G04250.1	21734647
AT5G37020.1	EES17334	AT1G04250.1	21734647
AT5G37020.1	OQU91311	AT1G04250.1	21734647
AT5G37020.1	EER97080	AT1G80390.1	21734647
AT5G37020.1	EER90896	AT3G23050.1	21734647
AT5G37020.1	EES17334	AT3G23050.1	21734647
AT5G37020.1	OQU91311	AT3G23050.1	21734647
AT5G37020.1	EES00605	AT3G62100.1	21734647
AT5G37020.1	EER90734	AT4G14560.1	14729917
AT5G37020.1	EER93778	AT4G14560.1	14729917
AT5G37020.1	EER98076	AT4G14560.1	14729917
AT5G37020.1	EES16315	AT4G14560.1	14729917
AT5G37020.1	EER90734	AT4G14560.1	21734647
AT5G37020.1	EER93778	AT4G14560.1	21734647
AT5G37020.1	EER98076	AT4G14560.1	21734647
AT5G37020.1	EES16315	AT4G14560.1	21734647
AT5G37020.1	KXG19391	AT4G32280.1	21734647
AT5G37020.1	KXG31308	AT4G32280.1	21734647
AT5G37020.1	EER90734	AT5G43700.1	21734647
AT5G37020.1	EER93778	AT5G43700.1	21734647
AT5G37020.1	EER98076	AT5G43700.1	21734647
AT5G37020.1	EES16315	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d001879_P036	Maize	nucleus	97.07	97.31
Os04t0671900-01	Rice	nucleus	94.38	94.5
TraesCS2D01G548900.1	Wheat	nucleus	91.45	89.92
TraesCS2B01G578500.1	Wheat	nucleus	91.45	89.92
TraesCS2A01G547800.1	Wheat	nucleus	91.09	89.77
HORVU2Hr1G121110.32	Barley	nucleus	91.58	89.5
Zm00001d026590_P003	Maize	nucleus	92.19	89.03
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	29.06	79.6
GSMUA_Achr11P...	Banana	nucleus	64.1	64.81
GSMUA_Achr4P25960_001	Banana	nucleus	63.13	64.54
KRH30740	Soybean	nucleus	64.71	62.8
KRG98044	Soybean	nucleus	64.22	62.54
KRH17251	Soybean	nucleus	64.22	62.4
KRH72896	Soybean	nucleus	64.1	61.98
Solyc02g037530.2.1	Tomato	nucleus	63.37	61.64
Solyc03g031970.2.1	Tomato	nucleus	62.64	60.78
CDY39274	Canola	nucleus	57.14	60.08
GSMUA_AchrUn_...	Banana	mitochondrion	37.36	59.88
Bra004125.1-P	Field mustard	nucleus	57.02	59.87
AT5G37020.1	Thale cress	nucleus	58.97	59.56
CDY07460	Canola	nucleus	56.78	59.54
PGSC0003DMT400048034	Potato	nucleus	53.85	58.64
CDY53537	Canola	nucleus	58.12	58.48
CDX74594	Canola	nucleus	58.36	58.36
Bra028110.1-P	Field mustard	nucleus	58.36	56.64
VIT_04s0079g00200.t01	Wine grape	nucleus	47.74	55.3
EES04575	Sorghum	nucleus	60.56	54.45
EER90218	Sorghum	nucleus	60.93	54.3
EES17392	Sorghum	nucleus	58.61	53.63
GSMUA_Achr8P13620_001	Banana	nucleus	24.42	41.32
KXG19536	Sorghum	nucleus	48.47	37.7
EES06968	Sorghum	nucleus	29.79	36.31
EES10850	Sorghum	nucleus	28.82	35.7
EES13038	Sorghum	nucleus	39.07	33.83
EES15359	Sorghum	nucleus	42.12	31.51
OQU84350	Sorghum	nucleus	40.54	31.03
EER90336	Sorghum	nucleus	43.83	30.98
KXG34038	Sorghum	nucleus	30.16	30.49
EES02172	Sorghum	nucleus	25.52	30.38
EES17013	Sorghum	nucleus	30.28	29.56
OQU83539	Sorghum	nucleus	28.82	28.96

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	UniProt:A0A1B6PP06	InterPro:AUX/IAA_dom
InterPro:Auxin_resp	InterPro:B3_DNA-bd	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009725	GO:GO:0009733	GO:GO:0009734	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987
GO:GO:0043565	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	EnsemblPlants:KXG27404	ProteinID:KXG27404
ProteinID:KXG27404.1	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF2	SMART:SM01019	EnsemblPlantsGene:SORBI_3006G262100	SUPFAM:SSF101936
SUPFAM:SSF54277	UniParc:UPI0003C72B2A	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:59708061..59715686

Molecular Weight (calculated)

91056.2 Da

IEP (calculated)

6.363

GRAVY (calculated)

-0.472

Length

819 amino acids

Sequence
(BLAST)

001: MSSSSGASIG QPPPPPPAPP PEEEKKCLNS ELWHACAGPL VCLPTVGTRV VYFPQGHSEQ VAASTNKEVD GHIPNYPNLP PQLICQLHDV TMHADVETDE
101: VYAQMTLQPL NPQEQNDAYL PAEMGIMSKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAERV FPPLDFTQQP PAQELIARDI HDVEWKFRHI FRGQPKRHLL
201: TTGWSVFVSA KRLVAGDSVL FIWNEKNQLL LGIRRASRPQ TVMPSSVLSS DSMHIGLLAA AAHAAATNSR FTIFYNPRAS PSEFVIPLSK YIKAVFHTRI
301: SVGMRFRMLF ETEESSVRRY MGTITEVSDA DPVRWPSSYW RSVKVGWDES TAGERPPRVS LWEIEPLTTF PMYPSLFPLR VKHPWYSGVA ALHDDSNALM
401: WLRGVAGEGG FQSLNFQSPG IGSWGQQRLH PSLLSNDHDQ YQAVVAAAAA SQSGGYLKQQ FLHLQQPMQS PQEQCNLNPL LQQQILQQAS QQQMVSPDAQ
501: NIQSVLSPNA IQQQLHQLQQ MQHAHNDQKQ KIQPDQPYQV PSSAVLPSPT SLPSHLREKF GFSDPNVNSS SFISSSSNEN MLESNFLQGS SKSVDLSRFN
601: QPVVSEQQQQ QQQQAWKQKF MGSQSMSFGG LVSLNSPTSK DGSADNKIGR DVQNQSLFSP QVDSSSLLYN MVPNLTSNVA DNNISVIPSG STYLQSPMYG
701: CLDDSSGLLQ NTGENDPAAR TFVKVYKSGS VGRSLDITRF SNYAELREEL GQMFGIKGQL DDPDRSGWQL VFVDRENDVL LLGDDPWESF VNSVWYIKIL
801: SPEDVHKMGK PGNDPRYLS

Best Arabidopsis Sequence Match ( AT5G37020.1 )
(BLAST)

001: MKLSTSGLGQ QGHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP
101: LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYTLQ PPAQELIARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS
201: AKRLVAGDSV IFIRNEKNQL FLGIRHATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML
301: FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLPDGRGDL GSGLTWLRGG
401: GGEQQGLLPL NYPSVGLFPW MQQRLDLSQM GTDNNQQYQA MLAAGLQNIG GGDPLRQQFV QLQEPHHQYL QQSASHNSDL MLQQQQQQQA SRHLMHAQTQ
501: IMSENLPQQN MRQEVSNQPA GQQQQLQQPD QNAYLNAFKM QNGHLQQWQQ QSEMPSPSFM KSDFTDSSNK FATTASPASG DGNLLNFSIT GQSVLPEQLT
601: TEGWSPKASN TFSEPLSLPQ AYPGKSLALE PGNPQNPSLF GVDPDSGLFL PSTVPRFASS SGDAEASPMS LTDSGFQNSL YSCMQDTTHE LLHGAGQINS
701: SNQTKNFVKV YKSGSVGRSL DISRFSSYHE LREELGKMFA IEGLLEDPLR SGWQLVFVDK ENDILLLGDD PWESFVNNVW YIKILSPEDV HQMGDHGEGS
801: GGLFPQNPTH L

Arabidopsis Description

ARF8Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178UFA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.