Factsheet for GSMUA_AchrUn_randomP06460_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P12630_001
GSMUA_Achr4P05200_001
GSMUA_Achr4P21020_001
GSMUA_Achr4P21030_001
GSMUA_Achr4P22520_001
GSMUA_Achr4P22530_001
GSMUA_Achr5P03110_001
GSMUA_Achr8P20610_001
GSMUA_Achr8P20620_001
GSMUA_Achr8P29850_001
GSMUA_Achr9P10690_001
GSMUA_Achr9P10700_001
GSMUA_Achr9P16800_001
GSMUA_Achr9P24330_001
GSMUA_Achr9P25550_001
GSMUA_Achr9P26900_001
GSMUA_Achr9P26910_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37020.1	GSMUA_Achr10P...	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr4P21020_001	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr4P22520_001	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr8P20610_001	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr9P10700_001	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr9P25550_001	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr10P...	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr4P21020_001	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr4P22520_001	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr8P20610_001	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr9P10700_001	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr9P25550_001	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr8P29850_001	AT3G62100.1	21734647
AT5G37020.1	GSMUA_Achr9P16800_001	AT3G62100.1	21734647
AT5G37020.1	GSMUA_Achr11P...	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr2P12630_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr4P05200_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr4P21030_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr4P22530_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr5P03110_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr8P20620_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr9P10690_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr9P24330_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr11P...	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr2P12630_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr4P05200_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr4P21030_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr4P22530_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr5P03110_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr8P20620_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr9P10690_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr9P24330_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr9P26900_001	AT4G32280.1	21734647
AT5G37020.1	GSMUA_Achr9P26910_001	AT4G32280.1	21734647
AT5G37020.1	GSMUA_Achr11P...	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr2P12630_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr4P05200_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr4P21030_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr4P22530_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr5P03110_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr8P20620_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr9P10690_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr9P24330_001	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	41.1	70.23
GSMUA_Achr4P25960_001	Banana	nucleus	64.58	41.2
GSMUA_Achr11P...	Banana	nucleus	60.67	38.27
GSMUA_Achr3P10240_001	Banana	nucleus	46.38	38.23
KRH17251	Soybean	nucleus	62.43	37.84
KRH72896	Soybean	nucleus	62.23	37.54
KXG27404	Sorghum	nucleus	59.88	37.36
CDY39274	Canola	nucleus	56.95	37.36
KRH30740	Soybean	nucleus	61.64	37.32
Bra004125.1-P	Field mustard	nucleus	56.95	37.31
GSMUA_Achr5P26580_001	Banana	nucleus	58.9	37.3
CDY07460	Canola	nucleus	56.95	37.26
KRG98044	Soybean	nucleus	61.06	37.1
Zm00001d001879_P036	Maize	nucleus	59.3	37.09
Solyc02g037530.2.1	Tomato	nucleus	61.06	37.05
Os04t0671900-01	Rice	nucleus	59.3	37.04
GSMUA_Achr5P02450_001	Banana	nucleus	59.88	36.96
AT5G37020.1	Thale cress	nucleus	58.32	36.74
Solyc03g031970.2.1	Tomato	nucleus	60.67	36.73
GSMUA_Achr3P23290_001	Banana	nucleus	58.9	36.71
TraesCS2A01G547800.1	Wheat	nucleus	59.1	36.34
TraesCS2B01G578500.1	Wheat	nucleus	59.1	36.25
CDY53537	Canola	nucleus	57.73	36.24
CDX74594	Canola	nucleus	57.93	36.14
TraesCS2D01G548900.1	Wheat	nucleus	58.9	36.13
HORVU2Hr1G121110.32	Barley	nucleus	59.1	36.04
GSMUA_Achr11P...	Banana	nucleus	57.93	35.71
GSMUA_Achr1P08230_001	Banana	mitochondrion	46.38	35.69
GSMUA_Achr6P19850_001	Banana	nucleus	58.71	35.09
Bra028110.1-P	Field mustard	nucleus	57.93	35.07
GSMUA_Achr9P08310_001	Banana	vacuole	33.07	34.7
GSMUA_Achr5P00590_001	Banana	nucleus	60.27	33.88
GSMUA_Achr11P...	Banana	nucleus	59.69	33.41
PGSC0003DMT400048034	Potato	nucleus	48.92	33.24
Zm00001d026590_P003	Maize	nucleus	54.4	32.78
GSMUA_Achr1P20040_001	Banana	nucleus	45.79	29.92
GSMUA_Achr9P18170_001	Banana	nucleus	46.77	27.99
VIT_04s0079g00200.t01	Wine grape	nucleus	37.77	27.3
GSMUA_AchrUn_...	Banana	nucleus	33.27	26.77
GSMUA_Achr6P36980_001	Banana	nucleus	44.23	26.34
GSMUA_Achr2P19760_001	Banana	nucleus	33.86	25.9
GSMUA_Achr6P07390_001	Banana	nucleus	33.07	25.8
GSMUA_Achr9P14090_001	Banana	nucleus	45.6	25.6
GSMUA_Achr10P...	Banana	nucleus	33.66	25.52
GSMUA_Achr10P...	Banana	nucleus	33.27	25.49
GSMUA_Achr7P24330_001	Banana	nucleus	32.49	24.92
GSMUA_Achr6P12780_001	Banana	nucleus	33.86	24.86
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	33.27	24.39
GSMUA_Achr3P05460_001	Banana	nucleus	45.79	24.05
GSMUA_Achr1P20000_001	Banana	nucleus	42.47	22.35
GSMUA_Achr6P08090_001	Banana	nucleus	35.81	22.21
GSMUA_Achr6P01740_001	Banana	nucleus	44.42	21.85
GSMUA_Achr10P...	Banana	nucleus	35.23	21.84
GSMUA_Achr8P23850_001	Banana	nucleus	45.6	21.84
GSMUA_Achr5P05010_001	Banana	nucleus	36.4	21.35
GSMUA_Achr6P16450_001	Banana	nucleus	35.81	20.96
GSMUA_AchrUn_...	Banana	nucleus	35.81	20.7
GSMUA_Achr1P20010_001	Banana	plasma membrane, plastid	40.12	19.52
GSMUA_Achr8P13620_001	Banana	nucleus	13.31	14.05

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_AchrUn_randomG06460_001	EnsemblPlants:GSMUA_AchrUn_randomP06460_001	EnsemblPlants:GSMUA_AchrUn_randomT06460_001	InterPro:IPR003340
InterPro:IPR015300	UniProt:M0U6V7	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384
PANTHER:PTHR31384:SF2	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0002962FC6	SEG:seg	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG06460_001]

Coordinates

chrchrUn_random:+:26303109..26309859

Molecular Weight (calculated)

58223.9 Da

IEP (calculated)

8.804

GRAVY (calculated)

-0.185

Length

511 amino acids

Sequence
(BLAST)

001: MGKCACVRQR TTSFLFCCQK FIHYPLSPLP FRGLRDSWEA RYGDLQEREL PRARISFWDQ ESCVLCRRIL AAKAASFCSS SYYEAFYCWY QPASTRRGGE
101: EMLGFGALAR LAGPLVSLPT AGTRVVYFPQ GHSEQAAAST NKEVESHFPN YPSLLPQLLC RLHNVTLRAD VETDEVYAQM TLQPLSPEEQ KVTYFPIEMG
201: FTSKQPTNYF CKILTASDTS THGGFSIPRR AAEKVFPPLD FSQQPPVQEL IARDLYDVEW KFRHIFRGQP KRHFLTTGWS VFVRAKRLVA GDSVLFIWNE
301: KNQLLLGIRR TNQPQTSASS SLVLSSDSMH IGLFAAAAHA AATNSRFTIF YNPRASPSEF VIPLSKYTKA VFHTCVSIGM RFRMLFETEE SSIRRYMGTI
401: TGISVLDPVR WPTSHWKTVQ VGWDEATEGK RQCRARVSLW EVEPLTTFPM YPSLFPIGRS WHPGASFPFN SCLLYFIYLC ISDIKENELN ALMWSRGLAA
501: ERGMMYDIGI F

Best Arabidopsis Sequence Match ( AT1G30330.1 )
(BLAST)

001: MRLSSAGFNP QPHEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LHPQLICQLH NVTMHADVET DEVYAQMTLQ
101: PLNAQEQKDP YLPAELGVPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELMAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIC DLDPTRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGLKED DMGMSMSSPL
401: MWDRGLQSLN FQGMGVNPWM QPRLDTSGLL GMQNDVYQAM AAAALQDMRG IDPAKAAASL LQFQNSPGFS MQSPSLVQPQ MLQQQLSQQQ QQLSQQQQQQ
501: QQLSQQQQQQ LSQQQQQQLS QQQQQQLSQQ QQQQAYLGVP ETHQPQSQAQ SQSNNHLSQQ QQQVVDNHNP SASSAAVVSA MSQFGSASQP NTSPLQSMTS
601: LCHQQSFSDT NGGNNPISPL HTLLSNFSQD ESSQLLHLTR TNSAMTSSGW PSKRPAVDSS FQHSGAGNNN TQSVLEQLGQ SHTSNVPPNA VSLPPFPGGR
701: ECSIEQEGSA SDPHSHLLFG VNIDSSSLLM PNGMSNLRSI GIEGGDSTTL PFTSSNFNND FSGNLAMTTP SSCIDESGFL QSSENLGSEN PQSNTFVKVY
801: KSGSFGRSLD ISKFSSYHEL RSELARMFGL EGQLEDPVRS GWQLVFVDRE NDVLLLGDDP WPEFVSSVWC IKILSPQEVQ QMGKRGLELL NSAPSSNNVD
901: KLPSNGNCDD FGNRSDPRNL GNGIASVGGS FNY

Arabidopsis Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.