Factsheet for GSMUA_Achr8P23850_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P14090_001	Banana	nucleus	67.76	79.45
GSMUA_Achr3P05460_001	Banana	nucleus	71.23	78.11
GSMUA_Achr5P05010_001	Banana	nucleus	59.51	72.9
Os06t0702600-01	Rice	nucleus	59.23	63.77
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	17.53	62.54
GSMUA_Achr6P01740_001	Banana	nucleus	60.45	62.08
Os02t0141100-00	Rice	nucleus	62.04	59.32
EER90336	Sorghum	nucleus	64.29	59.19
TraesCS6D01G102300.1	Wheat	nucleus	61.11	57.75
VIT_11s0065g00310.t01	Wine grape	nucleus	60.08	57.49
TraesCS7B01G316600.1	Wheat	nucleus	63.17	57.41
TraesCS6B01G141300.2	Wheat	nucleus	60.73	57.29
Zm00001d014690_P014	Maize	nucleus	64.11	57.29
TraesCS7D01G409700.1	Wheat	nucleus	63.07	57.28
TraesCS6A01G113000.1	Wheat	nucleus	60.92	57.27
TraesCS7A01G416400.1	Wheat	nucleus	62.89	57.2
HORVU6Hr1G020330.30	Barley	nucleus	60.82	56.88
OQU84350	Sorghum	nucleus	56.79	56.64
Solyc07g016180.2.1	Tomato	nucleus	57.83	55.49
Zm00001d015243_P001	Maize	nucleus	56.51	55.22
PGSC0003DMT400025312	Potato	nucleus	57.64	55.21
HORVU7Hr1G096460.7	Barley	mitochondrion, nucleus, vacuole	61.67	54.74
GSMUA_Achr3P10240_001	Banana	nucleus	31.4	54.03
KRH49070	Soybean	nucleus	55.2	53.06
KRH74145	Soybean	nucleus	54.17	52.36
GSMUA_Achr9P18170_001	Banana	nucleus	41.33	51.64
PGSC0003DMT400035592	Potato	nucleus	52.86	51.41
Solyc05g047460.2.1	Tomato	nucleus	52.76	51.32
KRH60117	Soybean	nucleus	52.39	50.86
KRH41404	Soybean	nucleus	51.83	49.69
GSMUA_Achr5P26580_001	Banana	nucleus	35.24	46.59
GSMUA_Achr3P23290_001	Banana	nucleus	35.8	46.59
GSMUA_Achr5P02450_001	Banana	nucleus	36.08	46.5
GSMUA_AchrUn_...	Banana	mitochondrion	21.84	45.6
GSMUA_Achr11P...	Banana	nucleus	34.68	44.63
GSMUA_Achr4P25960_001	Banana	nucleus	33.36	44.44
GSMUA_Achr11P...	Banana	nucleus	33.74	44.44
GSMUA_Achr6P19850_001	Banana	nucleus	35.15	43.86
GSMUA_Achr11P...	Banana	nucleus	36.83	43.04
GSMUA_Achr1P20040_001	Banana	nucleus	31.3	42.71
GSMUA_Achr5P00590_001	Banana	nucleus	36.18	42.46
GSMUA_Achr1P08230_001	Banana	mitochondrion	25.77	41.42
GSMUA_Achr6P36980_001	Banana	nucleus	31.96	39.74
GSMUA_Achr9P08310_001	Banana	vacuole	17.24	37.78
GSMUA_Achr10P...	Banana	nucleus	23.71	37.54
GSMUA_Achr6P07390_001	Banana	nucleus	22.59	36.79
GSMUA_Achr6P12780_001	Banana	nucleus	23.71	36.35
GSMUA_Achr2P19760_001	Banana	nucleus	22.59	36.08
GSMUA_Achr10P...	Banana	nucleus	21.74	34.78
GSMUA_AchrUn_...	Banana	nucleus	20.62	34.65
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	22.4	34.29
GSMUA_Achr7P24330_001	Banana	nucleus	21.18	33.93
GSMUA_Achr1P20000_001	Banana	nucleus	30.65	33.68
GSMUA_Achr6P08090_001	Banana	nucleus	25.49	33.01
GSMUA_Achr8P13620_001	Banana	nucleus	14.81	32.64
GSMUA_Achr10P...	Banana	nucleus	24.84	32.16
GSMUA_Achr6P16450_001	Banana	nucleus	25.21	30.81
GSMUA_AchrUn_...	Banana	nucleus	25.02	30.2
GSMUA_Achr1P20010_001	Banana	plasma membrane, plastid	29.62	30.1

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987
EnsemblPlantsGene:GSMUA_Achr8G23850_001	EnsemblPlants:GSMUA_Achr8P23850_001	EnsemblPlants:GSMUA_Achr8T23850_001	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
UniProt:M0TT38	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF9	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277
UniParc:UPI0002966F92	SEG:seg	:	:	:	:

Description

Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G23850_001]

Coordinates

chr8:-:28183517..28192979

Molecular Weight (calculated)

118817.0 Da

IEP (calculated)

6.894

GRAVY (calculated)

-0.470

Length

1067 amino acids

Sequence
(BLAST)

0001: MKAAANGAAV PNPCEGESIF QLALAVLSAA GGGLWMTRVA VTGDRNTINP ELWHACAGPL VTLPPVGSLV VYFPQGHSEQ YLLKSNPVAA SMQKDIDAHV
0101: PNYPNLPSKL ICLLHNVTLH ADLETDEVYA QMTLQPANSQ IQWLLPRTLK PISHCSSELA LKQTRPQTEF FCKTLTASDT STHGGFSVPR RAAEKNFPPL
0201: DFSMQPPSQE LQARDLHDNL WTFRHIYRGQ PKRHLLTTGW SLFVGGKRLF AGDSVLFIRD KKQQLLLGIR RANRQPTNIS SSVLSSDSMH IGILAAAAHA
0301: AANHSPFTVF YNPRASPSEF VVPFAKYQKA VYSNQISLGM RFRMMFETEE LGTRRYMGTI TGISDLDPVR WKNSQWCNLQ VGWDESAAGE RRNRVSIWDI
0401: EPVVAPFFIC PPPFFRKRPI PPGVPDDESS EMEIFFKRAM PWLGEEICIK DSQTQSTIMP GLSLVQWMNL QQNPSLANQT LLAETLQSLN GAVMQNLGTT
0501: DLCRQYDLTV QTKHQFVNQA LPNQRHNNVV QPQVLVQTQV QPQQQPVLQN NQLSQSSLPQ DQQHPQQLLL QQLRQQLQQQ QHQQQHHQQL QQQYEQQQSR
0601: TPVMPQQQQQ QSFSQSRMQQ PQHSQIQEYQ KAAIDVPQQL SNSHAQVQQP AILQQCAKAI SQVARPQTFQ NQPQQNPPQQ QLLHGELHRA FLPASPATNL
0701: IRASGSLLGA GRAQSGVTDD IPSCSTSPSA NNVVILPDSI LNRTQHCNIS TEKMSQSLLI PISKVQNQAV VAPQTYISNA VQMDCLDTTS SATSVCLSQT
0801: DGPLRQSLPL SSSNQPSMLR DPLPDIDVQG TDPRNSLLFG VNIDDSLGIP LATDSLLINN VDSGKYQNHI AGNVVANYNT SKDIQQELSS TMVSQSFGVP
0901: DMAFNSINST TNENGFLNKN SWVPTPPLPL QRMRTYTKVY KRGAVGRSID VTHYSGYDEL KHDLARMFSI EGQLEDRQRI GWKLVYVDHE NDVLLVGDDP
1001: WEEFVNCVRC IKILSPQEVQ QMSLDVDLGN NNLPNQACNS SDGGNPLRGH GDQNSGNPSA GSYDRFE

Best Arabidopsis Sequence Match ( AT1G19220.1 )
(BLAST)

0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR

Arabidopsis Description

ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.