Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G102300.1 | Wheat | nucleus | 98.59 | 99.11 |
| TraesCS6B01G141300.2 | Wheat | nucleus | 98.5 | 98.85 |
| HORVU6Hr1G020330.30 | Barley | nucleus | 97.27 | 96.76 |
| Os02t0141100-00 | Rice | nucleus | 79.56 | 80.91 |
| OQU84350 | Sorghum | nucleus | 75.42 | 80.0 |
| Zm00001d015243_P001 | Maize | nucleus | 74.36 | 77.29 |
| TraesCS7A01G416400.1 | Wheat | nucleus | 73.3 | 70.93 |
| GSMUA_Achr3P05460_001 | Banana | nucleus | 58.77 | 68.55 |
| GSMUA_Achr9P14090_001 | Banana | nucleus | 53.83 | 67.14 |
| GSMUA_Achr5P05010_001 | Banana | nucleus | 48.99 | 63.83 |
| GSMUA_Achr8P23850_001 | Banana | nucleus | 57.27 | 60.92 |
| VIT_11s0065g00310.t01 | Wine grape | nucleus | 56.21 | 57.22 |
| TraesCS7A01G252000.2 | Wheat | nucleus | 53.57 | 55.93 |
| Solyc07g016180.2.1 | Tomato | nucleus | 54.63 | 55.76 |
| PGSC0003DMT400025312 | Potato | nucleus | 54.45 | 55.48 |
| PGSC0003DMT400035592 | Potato | nucleus | 51.37 | 53.14 |
| Solyc05g047460.2.1 | Tomato | nucleus | 51.28 | 53.05 |
| KRH49070 | Soybean | nucleus | 51.63 | 52.79 |
| KRH74145 | Soybean | nucleus | 51.1 | 52.54 |
| KRH60117 | Soybean | nucleus | 48.9 | 50.5 |
| KRH41404 | Soybean | nucleus | 49.07 | 50.04 |
| TraesCS7A01G160800.1 | Wheat | nucleus | 42.38 | 45.12 |
| TraesCS7A01G461700.1 | Wheat | nucleus | 35.59 | 44.44 |
| TraesCS2A01G547800.1 | Wheat | nucleus | 31.98 | 43.68 |
| TraesCS6A01G138600.4 | Wheat | nucleus | 34.45 | 42.13 |
| TraesCS5A01G038300.2 | Wheat | nucleus | 32.69 | 41.27 |
| TraesCS2A01G309300.1 | Wheat | nucleus | 21.94 | 38.07 |
| TraesCS2A01G491000.1 | Wheat | nucleus | 29.52 | 35.08 |
| TraesCS3A01G442000.1 | Wheat | nucleus | 23.44 | 33.38 |
| TraesCS3A01G449300.3 | Wheat | nucleus | 22.91 | 31.36 |
| TraesCS3A01G159200.1 | Wheat | nucleus | 20.44 | 30.57 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 |
| GO:GO:0009987 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02309 |
| PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF14 |
| SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | EnsemblPlantsGene:TraesCS6A01G113000 | EnsemblPlants:TraesCS6A01G113000.1 | TIGR:cd10017 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:83251488..83258363
Molecular Weight (calculated)
126083.0 Da
IEP (calculated)
6.324
GRAVY (calculated)
-0.532
Length
1135 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAQSPASSAV AASAPCEGER KAPAINGELW HACAGPLVSL PPVGSLVVYF PQGHSEQVAA SMQKDVEAHV PSYPNLPSKL ICLLHSVTLQ ADPDTDEVYA
0101: QMTLQPVNTY AKEALQLSEL ALRQARPQME FFCKTLTASD TSTHGGFSVP RRAAEKIFPS LDFSLQPPCQ ELQARDIHDN VWTFRHIFRG QPKRHLLTTG
0201: WSLFVSGKKL FAGDSVIFVR DEKQQLLLGI RRANRQPTNI SSSVLSSDSM HIGVLAAAAH ASANTSPFTI FYNPRASPTE FVIPFAKYQK AMYSNQISLG
0301: MRFRMMCETE ELGTRRYMGT ITGISDLDPV RWKNSQWRSL QVGWDESAAG ERRNRVSIWE IEPLAAPFFI CPQPFFGVKR PRQLDDESLE MESLMKRAMP
0401: WLGEEVCIKD PQTQSATMPG LSLVQWMNMN RQQSSSLAST AMQSEYLRSA SNPAMQNIGA ADLARQLYMQ NHLLQQNSMQ FNPPKLHQQM KPINDLSNAA
0501: LPLNQLSAIR NHQDQKQDQQ RQQQSSIQAI PLSQAQAQTN IVQAQVILQN QMQQQQQQKQ PPPSPTQNQH GASGQHLLQS HQLQDQNLQM QQQQLLLHQQ
0601: LQQQQQQQQL NKLPGQLANL ASQQTQLSDQ ELHLQLLQKL QQQSLMSQSA VTLSRLPIIQ EQQNFLVDMQ QQLSNSHSLA QQQVMPQQDC RTSSLQTTQL
0701: PPPIQQEQQQ QQQQKPSQKQ VAPTYVSEAA FAQISSTSVI PKTGNATIVP GAAQSAVTEE IPSCSTSPST ANGNHLAQPT IGRNDHCKTS TEKVPHSIAQ
0801: MSILIPIEAV SVTPVTTKEL PKLNNGVKSS AITSKLPNVV SGLQNFMNNA LPTDNLETAS SATSLWPSQT DGLLHQGFAT SNFNQHQMFK DELPDVEIQG
0901: VDPSNSALFG MNNDGPLGFP METEGLLENA LDSVKYQNHF STDDENNYQM QKDARQEIST SMVSQSFGQS DMAFNSIDSA INDGALMNRS SWPPAAPPQR
1001: MRTFTKVYKR GAVGRSIDIG RFSGYGELNQ ALARMFGIEG QLEDRQRIGW KLVYTDHEDD VLLLGDDPWE EFVNCVKCIR ILSPQEVQKM SLDGDLGSNV
1101: LPNQACSSSD GGNTWKPRYE QNSGNPSIGP YDQFE
0101: QMTLQPVNTY AKEALQLSEL ALRQARPQME FFCKTLTASD TSTHGGFSVP RRAAEKIFPS LDFSLQPPCQ ELQARDIHDN VWTFRHIFRG QPKRHLLTTG
0201: WSLFVSGKKL FAGDSVIFVR DEKQQLLLGI RRANRQPTNI SSSVLSSDSM HIGVLAAAAH ASANTSPFTI FYNPRASPTE FVIPFAKYQK AMYSNQISLG
0301: MRFRMMCETE ELGTRRYMGT ITGISDLDPV RWKNSQWRSL QVGWDESAAG ERRNRVSIWE IEPLAAPFFI CPQPFFGVKR PRQLDDESLE MESLMKRAMP
0401: WLGEEVCIKD PQTQSATMPG LSLVQWMNMN RQQSSSLAST AMQSEYLRSA SNPAMQNIGA ADLARQLYMQ NHLLQQNSMQ FNPPKLHQQM KPINDLSNAA
0501: LPLNQLSAIR NHQDQKQDQQ RQQQSSIQAI PLSQAQAQTN IVQAQVILQN QMQQQQQQKQ PPPSPTQNQH GASGQHLLQS HQLQDQNLQM QQQQLLLHQQ
0601: LQQQQQQQQL NKLPGQLANL ASQQTQLSDQ ELHLQLLQKL QQQSLMSQSA VTLSRLPIIQ EQQNFLVDMQ QQLSNSHSLA QQQVMPQQDC RTSSLQTTQL
0701: PPPIQQEQQQ QQQQKPSQKQ VAPTYVSEAA FAQISSTSVI PKTGNATIVP GAAQSAVTEE IPSCSTSPST ANGNHLAQPT IGRNDHCKTS TEKVPHSIAQ
0801: MSILIPIEAV SVTPVTTKEL PKLNNGVKSS AITSKLPNVV SGLQNFMNNA LPTDNLETAS SATSLWPSQT DGLLHQGFAT SNFNQHQMFK DELPDVEIQG
0901: VDPSNSALFG MNNDGPLGFP METEGLLENA LDSVKYQNHF STDDENNYQM QKDARQEIST SMVSQSFGQS DMAFNSIDSA INDGALMNRS SWPPAAPPQR
1001: MRTFTKVYKR GAVGRSIDIG RFSGYGELNQ ALARMFGIEG QLEDRQRIGW KLVYTDHEDD VLLLGDDPWE EFVNCVKCIR ILSPQEVQKM SLDGDLGSNV
1101: LPNQACSSSD GGNTWKPRYE QNSGNPSIGP YDQFE
0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
Arabidopsis Description
ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.