Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G578500.1 | Wheat | nucleus | 99.52 | 99.28 |
| TraesCS2D01G548900.1 | Wheat | nucleus | 99.16 | 98.92 |
| HORVU2Hr1G121110.32 | Barley | nucleus | 98.07 | 97.26 |
| Os04t0671900-01 | Rice | nucleus | 90.25 | 91.69 |
| KXG27404 | Sorghum | nucleus | 89.77 | 91.09 |
| Zm00001d001879_P036 | Maize | nucleus | 88.69 | 90.21 |
| Zm00001d026590_P003 | Maize | nucleus | 84.12 | 82.43 |
| GSMUA_Achr8P13630_001 | Banana | cytosol, nucleus, plastid | 28.28 | 78.6 |
| GSMUA_Achr4P25960_001 | Banana | nucleus | 61.37 | 63.67 |
| GSMUA_Achr11P... | Banana | nucleus | 61.73 | 63.33 |
| KRH30740 | Soybean | nucleus | 63.06 | 62.09 |
| KRH17251 | Soybean | nucleus | 62.82 | 61.92 |
| KRG98044 | Soybean | nucleus | 62.58 | 61.83 |
| KRH72896 | Soybean | nucleus | 62.82 | 61.63 |
| Solyc02g037530.2.1 | Tomato | nucleus | 61.13 | 60.33 |
| Solyc03g031970.2.1 | Tomato | nucleus | 60.89 | 59.95 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 36.34 | 59.1 |
| AT5G37020.1 | Thale cress | nucleus | 57.4 | 58.82 |
| CDY39274 | Canola | nucleus | 54.99 | 58.66 |
| CDY07460 | Canola | nucleus | 55.11 | 58.64 |
| Bra004125.1-P | Field mustard | nucleus | 54.87 | 58.46 |
| PGSC0003DMT400048034 | Potato | nucleus | 52.47 | 57.98 |
| CDY53537 | Canola | nucleus | 56.2 | 57.37 |
| CDX74594 | Canola | nucleus | 56.32 | 57.14 |
| Bra028110.1-P | Field mustard | nucleus | 56.56 | 55.69 |
| VIT_04s0079g00200.t01 | Wine grape | nucleus | 45.85 | 53.89 |
| TraesCS7A01G461700.1 | Wheat | nucleus | 58.72 | 53.69 |
| TraesCS6A01G138600.4 | Wheat | nucleus | 57.76 | 51.72 |
| TraesCS5A01G038300.2 | Wheat | nucleus | 55.48 | 51.28 |
| GSMUA_Achr8P13620_001 | Banana | nucleus | 23.59 | 40.5 |
| TraesCS7A01G160800.1 | Wheat | nucleus | 48.26 | 37.62 |
| TraesCS2A01G309300.1 | Wheat | nucleus | 29.24 | 37.16 |
| TraesCS2A01G491000.1 | Wheat | nucleus | 38.39 | 33.4 |
| TraesCS6A01G113000.1 | Wheat | nucleus | 43.68 | 31.98 |
| TraesCS7A01G252000.2 | Wheat | nucleus | 41.64 | 31.83 |
| TraesCS3A01G442000.1 | Wheat | nucleus | 29.12 | 30.36 |
| TraesCS7A01G416400.1 | Wheat | nucleus | 42.6 | 30.18 |
| TraesCS3A01G449300.3 | Wheat | nucleus | 28.52 | 28.59 |
| TraesCS3A01G159200.1 | Wheat | nucleus | 25.87 | 28.33 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | ncoils:Coil | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009733 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom |
| PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 |
| PANTHER:PTHR31384:SF2 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | EnsemblPlantsGene:TraesCS2A01G547800 | EnsemblPlants:TraesCS2A01G547800.1 |
| TIGR:cd10017 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:755769024..755775128
Molecular Weight (calculated)
92553.5 Da
IEP (calculated)
6.404
GRAVY (calculated)
-0.527
Length
831 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSSGASLG GQPPPAAPPE EEKKNLNSEL WHACAGPLVC LPTLGTRVVY FPQGHSEQVA ASTNKEVEGH IPNYPNLPPQ LICQLHDVTM HADVETDEVY
101: AQMTLQPLNP QEQNDAYLPA EMGIMSKQPT NYFCKTLTAS DTSTHGGFSV PRRAAERVFP PLDFTQQPPA QELIARDIHD VEWKFRHIFR GQPKRHLLTT
201: GWSVFVSAKR LVAGDSVLFI WNEKNQLWLG IRRANRTQTV MPSSVLSSDS MHIGLLAAAA HAASTNSRFT IFYNPRACPS EFVIPLSKYI KAVFHTRISV
301: GMRFRMLFET EESSVRRYMG TITEVSDADP VRWASSYWRS VKVGWDESTA GERPPRVSLW EIEPLTTFPM YPSLFPLRVK HPWYSGVAGL QDDSNALMWL
401: RGVAGDGGYQ SMNFQSPGIG SWGQQRLHPS LMSTDHDQYQ AVVAAAAAAS QSGGYMKQQF LNLQQPMQSP QEHCNLNPLL QQQILQQASQ QQTVSADSQN
501: IQTMLNSSAI QHQLQQLQQL QQVHQVQQAQ QAHIDQKQKI QSDQTYHVPT SASLPSPTSL PSHLREKFGF SDPNANSSSF TTSSSSDNML ESNFLQGNSK
601: AVNLSRFNQP VASDQQQQQQ QQQQQQAWKQ KFMGSQSLSF GGSGLLNSPT SKDGSLESKI GSDVQHQSLF SPQVDSSSLL YNMVPNMTSN VADNNMSTIP
701: SGSTYLQSPM YGCLDDSSGI FQNTGENDPT SRTFVKVYKS GSVGRSLDIT RFSNYAELRE ELGQMYGIRG QLDDPDRSGW QLVFVDREND VLLLGDDPWE
801: SFVNSVWYIK ILSPEDVHKL GKQGNDPRYL S
101: AQMTLQPLNP QEQNDAYLPA EMGIMSKQPT NYFCKTLTAS DTSTHGGFSV PRRAAERVFP PLDFTQQPPA QELIARDIHD VEWKFRHIFR GQPKRHLLTT
201: GWSVFVSAKR LVAGDSVLFI WNEKNQLWLG IRRANRTQTV MPSSVLSSDS MHIGLLAAAA HAASTNSRFT IFYNPRACPS EFVIPLSKYI KAVFHTRISV
301: GMRFRMLFET EESSVRRYMG TITEVSDADP VRWASSYWRS VKVGWDESTA GERPPRVSLW EIEPLTTFPM YPSLFPLRVK HPWYSGVAGL QDDSNALMWL
401: RGVAGDGGYQ SMNFQSPGIG SWGQQRLHPS LMSTDHDQYQ AVVAAAAAAS QSGGYMKQQF LNLQQPMQSP QEHCNLNPLL QQQILQQASQ QQTVSADSQN
501: IQTMLNSSAI QHQLQQLQQL QQVHQVQQAQ QAHIDQKQKI QSDQTYHVPT SASLPSPTSL PSHLREKFGF SDPNANSSSF TTSSSSDNML ESNFLQGNSK
601: AVNLSRFNQP VASDQQQQQQ QQQQQQAWKQ KFMGSQSLSF GGSGLLNSPT SKDGSLESKI GSDVQHQSLF SPQVDSSSLL YNMVPNMTSN VADNNMSTIP
701: SGSTYLQSPM YGCLDDSSGI FQNTGENDPT SRTFVKVYKS GSVGRSLDIT RFSNYAELRE ELGQMYGIRG QLDDPDRSGW QLVFVDREND VLLLGDDPWE
801: SFVNSVWYIK ILSPEDVHKL GKQGNDPRYL S
001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS
Arabidopsis Description
ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.