Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G058600.1 | Wheat | nucleus | 99.21 | 98.81 |
| TraesCS5D01G069300.1 | Wheat | nucleus | 98.81 | 98.81 |
| HORVU5Hr1G014300.4 | Barley | nucleus | 95.24 | 86.96 |
| VIT_14s0081g00010.t01 | Wine grape | nucleus, plastid | 51.19 | 75.88 |
| GSMUA_Achr10P... | Banana | nucleus | 68.65 | 71.78 |
| Os12t0601300-01 | Rice | nucleus | 78.57 | 71.48 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 68.25 | 70.49 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 67.06 | 69.55 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 67.06 | 68.15 |
| CDY10694 | Canola | mitochondrion | 46.43 | 67.24 |
| PGSC0003DMT400041976 | Potato | nucleus | 55.95 | 66.2 |
| TraesCS5B01G381900.1 | Wheat | cytosol, mitochondrion, nucleus | 66.27 | 66.01 |
| Solyc06g008590.2.1 | Tomato | nucleus | 54.37 | 65.87 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 62.7 | 65.56 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 63.1 | 65.43 |
| KRG92683 | Soybean | nucleus | 58.33 | 64.76 |
| Solyc06g053830.2.1 | Tomato | nucleus | 55.95 | 64.68 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 64.68 | 64.43 |
| VIT_07s0141g00290.t01 | Wine grape | cytosol, nucleus, plastid | 60.71 | 64.29 |
| PGSC0003DMT400013627 | Potato | nucleus | 54.37 | 64.02 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 57.94 | 63.2 |
| KRH34377 | Soybean | nucleus | 59.52 | 62.76 |
| Bra040398.1-P | Field mustard | nucleus | 57.14 | 62.34 |
| Solyc09g083290.2.1 | Tomato | nucleus | 57.94 | 61.86 |
| AT3G04730.1 | Thale cress | cytosol, nucleus, plastid | 57.94 | 61.86 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 57.54 | 61.44 |
| KRH68738 | Soybean | nucleus | 59.13 | 61.32 |
| Bra001900.1-P | Field mustard | cytosol, nucleus, plastid | 57.54 | 61.18 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 57.54 | 61.18 |
| PGSC0003DMT400015610 | Potato | nucleus | 57.54 | 60.92 |
| KRG96977 | Soybean | nucleus | 55.56 | 60.87 |
| KRH67289 | Soybean | nucleus | 60.71 | 60.24 |
| Bra040122.1-P | Field mustard | nucleus | 53.57 | 60.0 |
| Bra033886.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 57.54 | 59.92 |
| KRH32099 | Soybean | nucleus | 58.73 | 59.68 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 55.95 | 59.49 |
| PGSC0003DMT400050101 | Potato | cytosol, nucleus, plastid | 58.73 | 59.44 |
| AT1G04250.1 | Thale cress | cytosol, nucleus, plastid | 53.97 | 59.39 |
| AT3G23050.1 | Thale cress | cytosol, nucleus, plastid | 57.14 | 59.26 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 56.35 | 59.17 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 56.35 | 59.17 |
| KRG95616 | Soybean | nucleus | 59.13 | 59.13 |
| Solyc01g097290.2.1 | Tomato | nucleus | 58.73 | 58.96 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 57.14 | 58.54 |
| Bra032520.1-P | Field mustard | nucleus | 52.38 | 58.15 |
| CDY18214 | Canola | nucleus | 51.59 | 58.04 |
| CDY47148 | Canola | nucleus | 53.57 | 57.94 |
| Bra039855.1-P | Field mustard | nucleus | 53.57 | 57.94 |
| CDY32537 | Canola | nucleus | 52.38 | 57.89 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 52.38 | 57.89 |
| TraesCS5B01G386800.1 | Wheat | nucleus | 53.57 | 57.69 |
| CDX89832 | Canola | nucleus | 51.19 | 57.59 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 53.17 | 57.51 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 51.98 | 57.21 |
| Bra030560.1-P | Field mustard | nucleus | 51.98 | 57.21 |
| Bra015298.1-P | Field mustard | nucleus | 50.79 | 57.14 |
| AT4G14550.2 | Thale cress | nucleus | 51.98 | 55.98 |
| KRH34091 | Soybean | cytosol, nucleus, plastid | 48.02 | 52.38 |
| KRH71337 | Soybean | nucleus | 34.13 | 50.59 |
| CDY50750 | Canola | nucleus, plastid | 57.54 | 49.83 |
| TraesCS3B01G140700.1 | Wheat | cytosol | 37.7 | 49.22 |
| TraesCS1B01G138100.1 | Wheat | cytosol | 38.49 | 48.99 |
| TraesCS7B01G256100.1 | Wheat | cytosol, nucleus, plastid | 33.73 | 46.96 |
| KRG92429 | Soybean | cytosol, nucleus, plastid | 60.32 | 45.92 |
| TraesCS7B01G242800.1 | Wheat | nucleus | 44.44 | 45.9 |
| TraesCS5B01G058800.1 | Wheat | cytosol | 35.71 | 42.06 |
| TraesCS5B01G381800.1 | Wheat | nucleus | 35.32 | 41.98 |
| TraesCS5B01G446100.1 | Wheat | cytosol, mitochondrion, nucleus | 29.37 | 41.81 |
| TraesCS3B01G181500.1 | Wheat | cytosol | 38.89 | 40.0 |
| TraesCS3B01G303900.1 | Wheat | nucleus, plastid | 37.3 | 36.72 |
| TraesCS1B01G418400.1 | Wheat | nucleus | 33.73 | 34.69 |
| CDY63072 | Canola | nucleus | 52.78 | 33.42 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF28 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:TraesCS5B01G058500 | EnsemblPlants:TraesCS5B01G058500.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5B:-:64264571..64267955
Molecular Weight (calculated)
26988.1 Da
IEP (calculated)
4.954
GRAVY (calculated)
-0.425
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MAADLGFEAT ELRLGLPGGG EGEARSSSGK RGFAETIDLK LKLEPAGEEA PAEEDRADVA VVAAAAAENQ EETATDAGGG KMKRSPSQSS VVTTAALPDP
101: AEKPRAPKAQ VVGWPPVRSF RKNILAEKSS PAAAAAFVKV SMDGAPYLRK VDLNMYKTYQ DLSKALEKMF SSFTIGNCGT PGMNGMNESK LMDLLNGSEY
201: VPTYEDKDGD WMLVGDVPWE MFVESCKRLR IMKGSEAIGL APRAMEKCKN RS
101: AEKPRAPKAQ VVGWPPVRSF RKNILAEKSS PAAAAAFVKV SMDGAPYLRK VDLNMYKTYQ DLSKALEKMF SSFTIGNCGT PGMNGMNESK LMDLLNGSEY
201: VPTYEDKDGD WMLVGDVPWE MFVESCKRLR IMKGSEAIGL APRAMEKCKN RS
001: MINFEATELR LGLPGGNHGG EMAGKNNGKR GFSETVDLKL NLSSTAMDSV SKVDLENMKE KVVKPPAKAQ VVGWPPVRSF RKNVMSGQKP TTGDATEGND
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS
Arabidopsis Description
IAA16Auxin-responsive protein IAA16 [Source:UniProtKB/Swiss-Prot;Acc:O24407]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.