Factsheet for TraesCS2A01G286200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1
TraesCS5A01G058600.1
TraesCS5A01G378300.2
TraesCS5A01G382600.1
TraesCS5B01G058500.1
TraesCS5B01G381900.1
TraesCS5B01G386800.1
TraesCS5D01G069300.1
TraesCS5D01G388300.2
TraesCS5D01G392000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12820.1	TraesCS5A01G058600.1	AT3G23050.1	15992545
AT1G12820.1	TraesCS5A01G378300.2	AT3G23050.1	15992545
AT1G12820.1	TraesCS5A01G382600.1	AT3G23050.1	15992545
AT1G12820.1	TraesCS5B01G058500.1	AT3G23050.1	15992545
AT1G12820.1	TraesCS5B01G381900.1	AT3G23050.1	15992545
AT1G12820.1	TraesCS5B01G386800.1	AT3G23050.1	15992545
AT1G12820.1	TraesCS5D01G069300.1	AT3G23050.1	15992545
AT1G12820.1	TraesCS5D01G388300.2	AT3G23050.1	15992545
AT1G12820.1	TraesCS5D01G392000.1	AT3G23050.1	15992545
AT1G12820.1	TraesCS3A01G457400.1	AT4G02570.1	15992545
AT1G12820.1	TraesCS3B01G497300.1	AT4G02570.1	15992545
AT1G12820.1	TraesCS3D01G450200.1	AT4G02570.1	15992545
AT3G26810.1	TraesCS5A01G058600.1	AT3G23050.1	15992545
AT3G26810.1	TraesCS5A01G378300.2	AT3G23050.1	15992545
AT3G26810.1	TraesCS5A01G382600.1	AT3G23050.1	15992545
AT3G26810.1	TraesCS5B01G058500.1	AT3G23050.1	15992545
AT3G26810.1	TraesCS5B01G381900.1	AT3G23050.1	15992545
AT3G26810.1	TraesCS5B01G386800.1	AT3G23050.1	15992545
AT3G26810.1	TraesCS5D01G069300.1	AT3G23050.1	15992545
AT3G26810.1	TraesCS5D01G388300.2	AT3G23050.1	15992545
AT3G26810.1	TraesCS5D01G392000.1	AT3G23050.1	15992545

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G285000.1	Wheat	cytosol	99.65	99.65
TraesCS2B01G302900.1	Wheat	cytosol	99.48	99.48
HORVU2Hr1G070800.1	Barley	cytosol	98.78	98.78
Os04t0395600-01	Rice	cytosol	90.59	90.43
Zm00001d003911_P003	Maize	cytosol	87.46	87.3
KXG26136	Sorghum	cytosol	87.98	85.16
Zm00001d025268_P001	Maize	cytosol	84.32	84.47
GSMUA_Achr9P01140_001	Banana	cytosol	69.16	74.48
GSMUA_AchrUn_...	Banana	cytosol	67.94	73.17
GSMUA_Achr6P08000_001	Banana	cytosol	67.42	72.61
GSMUA_Achr10P...	Banana	cytosol	65.85	70.92
GSMUA_Achr6P16510_001	Banana	cytosol	65.51	70.54
VIT_14s0068g01330.t01	Wine grape	cytosol	68.47	68.71
GSMUA_Achr6P20580_001	Banana	cytosol	59.76	68.6
AT3G26810.1	Thale cress	cytosol	66.2	66.09
CDY34211	Canola	cytosol	66.03	65.91
CDY28523	Canola	cytosol	65.85	65.74
Bra032954.1-P	Field mustard	cytosol	65.85	65.74
KRG94665	Soybean	cytosol	65.51	65.73
KRH06858	Soybean	cytosol	65.16	65.38
AT1G12820.1	Thale cress	cytosol	64.11	63.78
Bra026953.1-P	Field mustard	cytosol	63.94	63.49
CDY16034	Canola	cytosol	63.76	63.21
KRH70053	Soybean	cytosol	63.07	63.18
CDX71968	Canola	cytosol	63.59	63.15
CDY26594	Canola	cytosol	63.41	62.98
CDY31282	Canola	cytosol	64.11	62.69
CDY21068	Canola	cytosol	64.29	62.54
Bra016754.1-P	Field mustard	cytosol	64.29	62.54
TraesCS5A01G281100.1	Wheat	cytosol	60.45	60.98
KRH08397	Soybean	cytosol	60.8	60.91
TraesCS1A01G091300.1	Wheat	cytosol	55.92	54.22
TraesCS7A01G176200.1	Wheat	cytosol	49.13	45.19
TraesCS6A01G315300.1	Wheat	plastid	49.3	43.74
TraesCS4A01G001800.1	Wheat	cytosol	45.64	43.09
TraesCS3A01G367500.1	Wheat	cytosol	30.84	31.78
TraesCS1A01G279100.1	Wheat	cytosol	31.36	30.41
TraesCS4A01G091200.1	Wheat	cytosol	30.49	29.86

Protein Annotations

EnsemblPlants:TraesCS2A01G286200.1	EnsemblPlantsGene:TraesCS2A01G286200	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR43944	PANTHER:PTHR43944:SF9	PFAM:PF12937	SEG:seg	SMART:SM00256
SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	:

Description

No Description!

Coordinates

chr2A:-:485790045..485794443

Molecular Weight (calculated)

63993.7 Da

IEP (calculated)

5.991

GRAVY (calculated)

0.021

Length

574 amino acids

Sequence
(BLAST)

001: MTYFPEEVVE HIFSFLPAQC DRNTVSLVCK VWYEIERLSR RTVFVGNCYA VRPERVVLRF PNVRALTVKG KPHFADFNLV PPDWGGYAGP WIEAAARGCV
101: GLEELRMKRM VVSDESLELL AKSFPRFRAL VLISCEGFST DGLAAIASHC KLLRELDLQE NEVDDRGPRW LSCFPDSCTS LVSLNFACIK GEVNAGSLER
201: LVARSPSLRS LRLNRSVSVD TLSKILMSAP NLEDLGTGNL TDDFQAESYL RLTLALEKCK LLRSLSGFWD ASPLCLPFIY PVCGQLTGLN LSYAPTLDSS
301: DLTKMISHCV KLQRLWVLDC IADKGLQVVA SSCKDLQELR VFPSDFYIAG YSPVTEEGLV AISLGCQKLS SLLYFCHQMT NAALLTIAKN CPNFTRFRLC
401: ILEPGKPDAM TNQPLDEGFG AIVRECKGLR RLSISGLLTD KVFMYIGKFA KQLEMLSIAF AGDSDAGMMH VMEGCNNLRK LEIRDSPFGD AALLENVTKY
501: ETMRSLWMSS CNVTEKGCQI LASKMPMLNV EVINEVDESN EMDENHGIPK VDKLYVYRTT AGARDDAPNF VKIL

Best Arabidopsis Sequence Match ( AT3G26810.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVTSHK DRNAISLVCK SWYKIERYSR QKVFIGNCYA INPERLLRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVLP WIEALARSRV
101: GLEELRLKRM VVTDESLELL SRSFVNFKSL VLVSCEGFTT DGLASIAANC RHLRDLDLQE NEIDDHRGQW LSCFPDTCTT LVTLNFACLE GETNLVALER
201: LVARSPNLKS LKLNRAVPLD ALARLMACAP QIVDLGVGSY ENDPDSESYL KLMAVIKKCT SLRSLSGFLE AAPHCLSAFH PICHNLTSLN LSYAAEIHGS
301: HLIKLIQHCK KLQRLWILDS IGDKGLEVVA STCKELQELR VFPSDLLGGG NTAVTEEGLV AISAGCPKLH SILYFCQQMT NAALVTVAKN CPNFIRFRLC
401: ILEPNKPDHV TSQPLDEGFG AIVKACKSLR RLSLSGLLTD QVFLYIGMYA NQLEMLSIAF AGDTDKGMLY VLNGCKKMKK LEIRDSPFGD TALLADVSKY
501: ETMRSLWMSS CEVTLSGCKR LAEKAPWLNV EIINENDNNR MEENGHEGRQ KVDKLYLYRT VVGTRMDAPP FVWIL

Arabidopsis Description

AFB2AFB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VGF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.