CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90896
EES04173
EES17334
OQU91311

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12820.1	EER90896	AT3G23050.1	15992545
AT1G12820.1	EES17334	AT3G23050.1	15992545
AT1G12820.1	OQU91311	AT3G23050.1	15992545
AT1G12820.1	EES04173	AT4G02570.1	15992545
AT3G26810.1	EER90896	AT3G23050.1	15992545
AT3G26810.1	EES17334	AT3G23050.1	15992545
AT3G26810.1	OQU91311	AT3G23050.1	15992545

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003911_P003	Maize	cytosol	93.42	96.35
Zm00001d025268_P001	Maize	cytosol	90.05	93.19
Os04t0395600-01	Rice	cytosol	86.68	89.39
TraesCS2D01G285000.1	Wheat	cytosol	85.16	87.98
TraesCS2B01G302900.1	Wheat	cytosol	85.16	87.98
TraesCS2A01G286200.1	Wheat	cytosol	85.16	87.98
HORVU2Hr1G070800.1	Barley	cytosol	85.16	87.98
GSMUA_AchrUn_...	Banana	cytosol	67.12	74.67
GSMUA_Achr9P01140_001	Banana	cytosol	66.27	73.73
GSMUA_Achr6P08000_001	Banana	cytosol	65.94	73.36
GSMUA_Achr10P...	Banana	cytosol	65.09	72.42
GSMUA_Achr6P16510_001	Banana	cytosol	65.09	72.42
VIT_14s0068g01330.t01	Wine grape	cytosol	67.79	70.28
GSMUA_Achr6P20580_001	Banana	cytosol	58.01	68.8
KRG94665	Soybean	cytosol	64.76	67.13
AT3G26810.1	Thale cress	cytosol	64.92	66.96
Bra032954.1-P	Field mustard	cytosol	64.92	66.96
KRH06858	Soybean	cytosol	64.42	66.78
CDY34211	Canola	cytosol	64.76	66.78
CDY28523	Canola	cytosol	64.59	66.61
AT1G12820.1	Thale cress	cytosol	63.24	64.99
Bra026953.1-P	Field mustard	cytosol	62.73	64.36
CDX71968	Canola	cytosol	62.73	64.36
CDY16034	Canola	cytosol	62.56	64.08
CDY31282	Canola	cytosol	63.41	64.05
KRH70053	Soybean	cytosol	61.72	63.87
CDY26594	Canola	cytosol	62.23	63.84
CDY21068	Canola	cytosol	63.24	63.56
Bra016754.1-P	Field mustard	cytosol	63.07	63.39
KRH08397	Soybean	cytosol	58.52	60.56
EES09791	Sorghum	cytosol	59.02	60.55
KXG21312	Sorghum	plastid	54.13	54.31
EER92735	Sorghum	cytosol	43.0	42.36
EES05842	Sorghum	plastid	46.37	41.54
EES18318	Sorghum	cytosol	31.53	31.22
EES01769	Sorghum	cytosol	30.69	30.54
EER95129	Sorghum	cytosol	29.34	29.44

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	UniProt:A0A1B6PKE7	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675	EnsemblPlants:KXG26136
ProteinID:KXG26136	ProteinID:KXG26136.1	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF12937	PANTHER:PTHR43944
PANTHER:PTHR43944:SF9	SMART:SM00256	SMART:SM00367	EnsemblPlantsGene:SORBI_3006G056000	SUPFAM:SSF52047	UniParc:UPI0003C70361
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:39937540..39942597

Molecular Weight (calculated)

66411.5 Da

IEP (calculated)

6.584

GRAVY (calculated)

-0.059

Length

593 amino acids

Sequence
(BLAST)

001: MTYFPEEVVE HIFSFLPSHS DRNTVSLVCK VWYEVERLSR RAVFVGNCYA VRPERVVLRF PNVKALTVKG KPHFADFNLV PPDWGGYAGP WIEAAARSCV
101: GLEELRMKRM VVSDENLELL ARSFPRFKVL VLISCEGFST DGLAAVASHC KLLRELDLQE NDVEDRGPRW LSFFPDSCTS LVSLNFACIK GEVNSGALER
201: LVARSPNLRS LRLNRSVSVD TLSKILARTP NLEDLGTGNL TDEFQAESYA RLTSALEKCK MLRSLSGFWD ASPICVPYIY PLCHQLTGLN LSYTPTLDYS
301: DLTKMVSRCV KLQRLWVLDC ISDKGLQVVA SSCKDLQELR VFPSDFYVAG ASAVTEEGLV AISSGCPKLS SLLYFCHQMT NEALITVAKN CPNFIRFRLC
401: ILEPKKPDAM TGQPLDEGFG AIVRECKGLR RLSMSGLLTD RVFMYIGKYA KYLEMLSIAF AGDSDKGMMD VMNGCKNLRK LEIRDSPFGD VALLGNVAKY
501: ETMRSLWMSS CDVTLKGCQV LASKMPMLNV EIMNELDGSS EMEENHTDIS KVDKLHVSEM EENHTDLSKV DKLYVYRTTA GARDDAPNFV KIL

Best Arabidopsis Sequence Match ( AT3G26810.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVTSHK DRNAISLVCK SWYKIERYSR QKVFIGNCYA INPERLLRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVLP WIEALARSRV
101: GLEELRLKRM VVTDESLELL SRSFVNFKSL VLVSCEGFTT DGLASIAANC RHLRDLDLQE NEIDDHRGQW LSCFPDTCTT LVTLNFACLE GETNLVALER
201: LVARSPNLKS LKLNRAVPLD ALARLMACAP QIVDLGVGSY ENDPDSESYL KLMAVIKKCT SLRSLSGFLE AAPHCLSAFH PICHNLTSLN LSYAAEIHGS
301: HLIKLIQHCK KLQRLWILDS IGDKGLEVVA STCKELQELR VFPSDLLGGG NTAVTEEGLV AISAGCPKLH SILYFCQQMT NAALVTVAKN CPNFIRFRLC
401: ILEPNKPDHV TSQPLDEGFG AIVKACKSLR RLSLSGLLTD QVFLYIGMYA NQLEMLSIAF AGDTDKGMLY VLNGCKKMKK LEIRDSPFGD TALLADVSKY
501: ETMRSLWMSS CEVTLSGCKR LAEKAPWLNV EIINENDNNR MEENGHEGRQ KVDKLYLYRT VVGTRMDAPP FVWIL

Arabidopsis Description

AFB2AFB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VGF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.