Factsheet for GSMUA_Achr6P20580_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr4P21020_001
GSMUA_Achr4P22520_001
GSMUA_Achr8P20610_001
GSMUA_Achr9P10700_001
GSMUA_Achr9P17620_001
GSMUA_Achr9P25550_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12820.1	GSMUA_Achr10P...	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr4P21020_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr4P22520_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr8P20610_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr9P10700_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr9P25550_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr9P17620_001	AT4G02570.1	15992545
AT3G26810.1	GSMUA_Achr10P...	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr4P21020_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr4P22520_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr8P20610_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr9P10700_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr9P25550_001	AT3G23050.1	15992545

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P01140_001	Banana	cytosol	83.0	77.86
GSMUA_AchrUn_...	Banana	cytosol	77.8	72.98
GSMUA_Achr6P08000_001	Banana	cytosol	77.4	72.61
GSMUA_Achr10P...	Banana	cytosol	76.2	71.48
GSMUA_Achr6P16510_001	Banana	cytosol	75.2	70.54
HORVU6Hr1G021040.2	Barley	extracellular	19.0	67.86
GSMUA_Achr5P26930_001	Banana	cytosol	56.8	61.21
Os04t0395600-01	Rice	cytosol	69.8	60.7
VIT_14s0068g01330.t01	Wine grape	cytosol	69.2	60.49
TraesCS2D01G285000.1	Wheat	cytosol	68.8	59.93
HORVU2Hr1G070800.1	Barley	cytosol	68.8	59.93
TraesCS2B01G302900.1	Wheat	cytosol	68.6	59.76
TraesCS2A01G286200.1	Wheat	cytosol	68.6	59.76
KRG94665	Soybean	cytosol	67.6	59.09
Zm00001d003911_P003	Maize	cytosol	67.6	58.78
KRH06858	Soybean	cytosol	66.8	58.39
KXG26136	Sorghum	cytosol	68.8	58.01
Zm00001d025268_P001	Maize	cytosol	65.6	57.24
KRH70053	Soybean	cytosol	65.0	56.72
AT3G26810.1	Thale cress	cytosol	65.2	56.7
Bra032954.1-P	Field mustard	cytosol	64.8	56.35
CDY34211	Canola	cytosol	64.6	56.17
AT1G12820.1	Thale cress	cytosol	64.8	56.15
CDY28523	Canola	cytosol	64.4	56.0
CDX71968	Canola	cytosol	63.6	55.02
CDY16034	Canola	cytosol	63.6	54.92
Bra026953.1-P	Field mustard	cytosol	63.4	54.84
CDY26594	Canola	cytosol	62.8	54.33
CDY31282	Canola	cytosol	63.6	54.17
KRH08397	Soybean	cytosol	62.0	54.1
Bra016754.1-P	Field mustard	cytosol	63.4	53.73
CDY21068	Canola	cytosol	63.0	53.39
HORVU5Hr1G075620.2	Barley	cytosol	59.0	51.94
TraesCS5A01G281100.1	Wheat	cytosol	59.0	51.85
Os11t0515500-01	Rice	cytosol	58.8	51.76
TraesCS5D01G288000.1	Wheat	cytosol	58.8	51.67
TraesCS5B01G280100.1	Wheat	cytosol	58.6	51.22
GSMUA_Achr3P23850_001	Banana	cytosol	58.6	50.34
Zm00001d007357_P005	Maize	cytosol	56.6	49.39
EES09791	Sorghum	cytosol	56.6	48.96
GSMUA_Achr3P06710_001	Banana	cytosol	48.0	41.88
GSMUA_Achr5P05520_001	Banana	cytosol	48.8	41.57
GSMUA_Achr7P11780_001	Banana	cytosol	47.6	40.34
GSMUA_Achr5P28930_001	Banana	cytosol	26.6	23.75
GSMUA_Achr6P33630_001	Banana	cytosol, mitochondrion, nucleus	27.4	23.5
GSMUA_Achr9P03690_001	Banana	cytosol	27.2	22.55
GSMUA_Achr8P02350_001	Banana	cytosol	3.8	11.05

Protein Annotations

EnsemblPlants:GSMUA_Achr6P20580_001	EnsemblPlants:GSMUA_Achr6T20580_001	EnsemblPlantsGene:GSMUA_Achr6G20580_001	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR43944	PANTHER:PTHR43944:SF9	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI0002960621
UniProt:M0T8Q6	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	:	:	:

Description

Transport inhibitor response 1-like protein Os04g0395600 [Source:GMGC_GENE;Acc:GSMUA_Achr6G20580_001]

Coordinates

chr6:-:15271915..15274334

Molecular Weight (calculated)

55488.3 Da

IEP (calculated)

6.705

GRAVY (calculated)

0.040

Length

500 amino acids

Sequence
(BLAST)

001: MVVSDESLEL LARSFPNFKA LVLVSCEGFT TDGLAAIATH CRGLRELDLQ ENEVEDHGRQ WLSCFPDSCT SLESLNFACL KGEVNAGALE RLVARCVNLR
101: SLKLNRAISV ESLARMLART PHLVELGTGS FTVEHRAEAY QRLIHAFRKC KSLKSLSGFW DVAPRCLQSI YSICPNLTVL NLSYAPAIQG ADLVKLIRHC
201: FKLQKLWVLD CIRDKGLAVV ASTCQELQEL RVFPSDIYGT GTAAVTEEGL VAISSGCSKL NSLLYFCHQM TNAALITVAK NCPHFTRFRL CILDPGKPDP
301: DTNQPLDEGF GAIVRSCKDL RRLSLSGLLT DKVFLYIGEY AARLEMLSIA FAGDSDKGMV YVLNGCKNLR KLEIRDSPFG DAALLENVGK YETMRSLWMS
401: SCDVTLGGCK ALAAKMPRLN VEVINDRDES DEMEENPSDM HKVEKMYVYR TLAGARNDAP EFVEILFSTV LSVACALEFI SMGALQRGRH STYHLFYLTL

Best Arabidopsis Sequence Match ( AT1G12820.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL

Arabidopsis Description

AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.