Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G26810.1 | CDX92973 | AT3G23050.1 | 15992545 |
AT3G26810.1 | CDY10349 | AT3G23050.1 | 15992545 |
AT3G26810.1 | CDY10694 | AT3G23050.1 | 15992545 |
AT3G26810.1 | CDY30781 | AT3G23050.1 | 15992545 |
AT3G26810.1 | CDY63910 | AT3G23050.1 | 15992545 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra032954.1-P | Field mustard | cytosol | 99.48 | 99.48 |
CDY28523 | Canola | cytosol | 98.43 | 98.43 |
AT3G26810.1 | Thale cress | cytosol | 92.7 | 92.7 |
CDX71968 | Canola | cytosol | 82.96 | 82.53 |
CDY16034 | Canola | cytosol | 82.78 | 82.21 |
CDY26594 | Canola | cytosol | 82.43 | 82.01 |
CDY21068 | Canola | cytosol | 81.74 | 79.66 |
CDY31282 | Canola | cytosol | 80.7 | 79.05 |
VIT_14s0068g01330.t01 | Wine grape | cytosol | 75.13 | 75.52 |
KRG94665 | Soybean | cytosol | 73.91 | 74.3 |
KRH06858 | Soybean | cytosol | 72.87 | 73.25 |
KRH70053 | Soybean | cytosol | 72.17 | 72.43 |
GSMUA_AchrUn_... | Banana | cytosol | 66.43 | 71.67 |
GSMUA_Achr6P08000_001 | Banana | cytosol | 65.39 | 70.54 |
GSMUA_Achr10P... | Banana | cytosol | 64.52 | 69.61 |
GSMUA_Achr6P16510_001 | Banana | cytosol | 64.35 | 69.42 |
GSMUA_Achr9P01140_001 | Banana | cytosol | 64.0 | 69.04 |
KRH08397 | Soybean | cytosol | 68.7 | 68.94 |
Zm00001d003911_P003 | Maize | cytosol | 66.26 | 66.26 |
HORVU2Hr1G070800.1 | Barley | cytosol | 66.09 | 66.2 |
TraesCS2D01G285000.1 | Wheat | cytosol | 66.09 | 66.2 |
TraesCS2A01G286200.1 | Wheat | cytosol | 65.91 | 66.03 |
Os04t0395600-01 | Rice | cytosol | 65.91 | 65.91 |
TraesCS2B01G302900.1 | Wheat | cytosol | 65.74 | 65.85 |
KXG26136 | Sorghum | cytosol | 66.78 | 64.76 |
Zm00001d025268_P001 | Maize | cytosol | 64.52 | 64.75 |
GSMUA_Achr6P20580_001 | Banana | cytosol | 56.17 | 64.6 |
HORVU6Hr1G021040.2 | Barley | extracellular | 14.96 | 61.43 |
CDY68868 | Canola | cytosol | 56.0 | 59.63 |
TraesCS5D01G288000.1 | Wheat | cytosol | 58.43 | 59.05 |
TraesCS5B01G280100.1 | Wheat | cytosol | 58.61 | 58.92 |
Os11t0515500-01 | Rice | cytosol | 58.09 | 58.8 |
HORVU5Hr1G075620.2 | Barley | cytosol | 58.09 | 58.8 |
CDY53998 | Canola | cytosol | 59.65 | 58.73 |
TraesCS5A01G281100.1 | Wheat | cytosol | 58.09 | 58.7 |
EES09791 | Sorghum | cytosol | 58.96 | 58.65 |
CDY11468 | Canola | cytosol | 60.0 | 57.98 |
CDX76680 | Canola | cytosol | 59.83 | 57.82 |
Zm00001d007357_P005 | Maize | cytosol | 57.04 | 57.24 |
CDY53774 | Canola | cytosol | 57.91 | 56.83 |
CDX90899 | Canola | cytosol | 57.04 | 55.97 |
CDY21947 | Canola | plastid, vacuole | 57.74 | 53.04 |
CDX67912 | Canola | endoplasmic reticulum, golgi | 59.48 | 53.02 |
CDY22108 | Canola | endoplasmic reticulum, golgi, plastid, vacuole | 57.91 | 52.11 |
CDX89163 | Canola | cytosol | 54.43 | 50.0 |
CDY21439 | Canola | cytosol | 52.17 | 49.67 |
CDX83172 | Canola | cytosol, plastid | 52.0 | 49.26 |
CDY03450 | Canola | cytosol | 49.91 | 47.05 |
CDY34286 | Canola | cytosol | 49.74 | 46.96 |
CDX97301 | Canola | cytosol | 6.96 | 43.48 |
CDY24941 | Canola | cytosol | 31.48 | 30.68 |
CDY20501 | Canola | cytosol | 31.83 | 30.4 |
CDX74819 | Canola | cytosol | 31.65 | 30.33 |
CDX93223 | Canola | cytosol | 30.96 | 30.12 |
CDX93225 | Canola | cytosol | 30.96 | 29.97 |
CDY07041 | Canola | cytosol | 30.43 | 29.56 |
CDY07040 | Canola | cytosol | 30.61 | 29.0 |
CDY60996 | Canola | endoplasmic reticulum, golgi | 31.48 | 25.75 |
Protein Annotations
EnsemblPlants:CDY34211 | EnsemblPlantsGene:GSBRNA2T00056205001 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp |
PANTHER:PTHR43944 | PANTHER:PTHR43944:SF9 | ProteinID:CDY34211 | ProteinID:CDY34211.1 | SMART:SM00256 | SMART:SM00367 |
SUPFAM:SSF52047 | UniParc:UPI0004EF2F14 | UniProt:A0A078H8V5 | MapMan:11.2.2.1.1 | MapMan:19.2.2.8.1.4.6 | : |
Description
BnaA02g28290DBnaA02g28290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8V5]
Coordinates
chrLK032330:-:387891..390814
Molecular Weight (calculated)
64598.2 Da
IEP (calculated)
6.995
GRAVY (calculated)
-0.053
Length
575 amino acids
Sequence
(BLAST)
(BLAST)
001: MNYFPDEVIE HVFDFVTSHK DRNSISLVCK SWFKIERYSR QNVFIGNCYA INPERLLRRF PCFKSLTLKG KPHFADFNLV PHGWGGFVQP WIEALARSRV
101: GLEELRLKRM VVTDESLELL SRSFVNFKSL VLVSCEGFST DGLASIASNC RHLQDLDLQE NEIDDHRGQW LSCFPETYTS LVTLNFACLE GETNLVALER
201: LVARSPNLRS LKLNRAVPLD ALARLMACAP QIVDLGVGSY EDEQDSESCL KLQAAIRKCT SLRSLSGFLE AAPHCLSAFH PVCHNLASLN LSYAAEIHGS
301: HLIKLIEHCK KLQRLWILDS IGDKGLEVVA STCKELQELR VFPTDLQGGG NTAVTEDGLV AISAGCPKLH SILYFCQQMT NAALITVAKN CPNFIRFRLC
401: ILEPHKPDHV TSQPLDEGFG AIVQACKNLK RLSVSGLLTD QVFLYIGMFA TELEMLSIAF AGDTDKGMLY VLNGCKKMRK LEIRDSPFGD AALLADVNKY
501: ETMRSLWMSS CEVTLGGCKR LARKAPWLNV EIINENDNNR MEENGYEGRQ KVDKLYLYRT VVGTRVDAPP FVWIL
101: GLEELRLKRM VVTDESLELL SRSFVNFKSL VLVSCEGFST DGLASIASNC RHLQDLDLQE NEIDDHRGQW LSCFPETYTS LVTLNFACLE GETNLVALER
201: LVARSPNLRS LKLNRAVPLD ALARLMACAP QIVDLGVGSY EDEQDSESCL KLQAAIRKCT SLRSLSGFLE AAPHCLSAFH PVCHNLASLN LSYAAEIHGS
301: HLIKLIEHCK KLQRLWILDS IGDKGLEVVA STCKELQELR VFPTDLQGGG NTAVTEDGLV AISAGCPKLH SILYFCQQMT NAALITVAKN CPNFIRFRLC
401: ILEPHKPDHV TSQPLDEGFG AIVQACKNLK RLSVSGLLTD QVFLYIGMFA TELEMLSIAF AGDTDKGMLY VLNGCKKMRK LEIRDSPFGD AALLADVNKY
501: ETMRSLWMSS CEVTLGGCKR LARKAPWLNV EIINENDNNR MEENGYEGRQ KVDKLYLYRT VVGTRVDAPP FVWIL
001: MNYFPDEVIE HVFDFVTSHK DRNAISLVCK SWYKIERYSR QKVFIGNCYA INPERLLRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVLP WIEALARSRV
101: GLEELRLKRM VVTDESLELL SRSFVNFKSL VLVSCEGFTT DGLASIAANC RHLRDLDLQE NEIDDHRGQW LSCFPDTCTT LVTLNFACLE GETNLVALER
201: LVARSPNLKS LKLNRAVPLD ALARLMACAP QIVDLGVGSY ENDPDSESYL KLMAVIKKCT SLRSLSGFLE AAPHCLSAFH PICHNLTSLN LSYAAEIHGS
301: HLIKLIQHCK KLQRLWILDS IGDKGLEVVA STCKELQELR VFPSDLLGGG NTAVTEEGLV AISAGCPKLH SILYFCQQMT NAALVTVAKN CPNFIRFRLC
401: ILEPNKPDHV TSQPLDEGFG AIVKACKSLR RLSLSGLLTD QVFLYIGMYA NQLEMLSIAF AGDTDKGMLY VLNGCKKMKK LEIRDSPFGD TALLADVSKY
501: ETMRSLWMSS CEVTLSGCKR LAEKAPWLNV EIINENDNNR MEENGHEGRQ KVDKLYLYRT VVGTRMDAPP FVWIL
101: GLEELRLKRM VVTDESLELL SRSFVNFKSL VLVSCEGFTT DGLASIAANC RHLRDLDLQE NEIDDHRGQW LSCFPDTCTT LVTLNFACLE GETNLVALER
201: LVARSPNLKS LKLNRAVPLD ALARLMACAP QIVDLGVGSY ENDPDSESYL KLMAVIKKCT SLRSLSGFLE AAPHCLSAFH PICHNLTSLN LSYAAEIHGS
301: HLIKLIQHCK KLQRLWILDS IGDKGLEVVA STCKELQELR VFPSDLLGGG NTAVTEEGLV AISAGCPKLH SILYFCQQMT NAALVTVAKN CPNFIRFRLC
401: ILEPNKPDHV TSQPLDEGFG AIVKACKSLR RLSLSGLLTD QVFLYIGMYA NQLEMLSIAF AGDTDKGMLY VLNGCKKMKK LEIRDSPFGD TALLADVSKY
501: ETMRSLWMSS CEVTLSGCKR LAEKAPWLNV EIINENDNNR MEENGHEGRQ KVDKLYLYRT VVGTRMDAPP FVWIL
Arabidopsis Description
AFB2AFB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VGF7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.