CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80545
CDX80590
CDX85931
CDX87072
CDX87650
CDX88204
CDX90932
CDX92973
CDY10349
CDY10694
CDY13521
CDY18013
CDY19790
CDY21896
CDY22060
CDY30781
CDY39073
CDY63910

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03190.1	CDX68112	AT1G75950.1	12008900
AT4G03190.1	CDX73212	AT1G75950.1	12008900
AT4G03190.1	CDX80590	AT1G75950.1	12008900
AT4G03190.1	CDX85931	AT1G75950.1	12008900
AT4G03190.1	CDX87650	AT1G75950.1	12008900
AT4G03190.1	CDY13521	AT1G75950.1	12008900
AT4G03190.1	CDY39073	AT1G75950.1	12008900
AT4G03190.1	CDX68112	AT1G75950.1	15992545
AT4G03190.1	CDX73212	AT1G75950.1	15992545
AT4G03190.1	CDX80590	AT1G75950.1	15992545
AT4G03190.1	CDX85931	AT1G75950.1	15992545
AT4G03190.1	CDX87650	AT1G75950.1	15992545
AT4G03190.1	CDY13521	AT1G75950.1	15992545
AT4G03190.1	CDY39073	AT1G75950.1	15992545
AT4G03190.1	CDX92973	AT3G23050.1	15992545
AT4G03190.1	CDY10349	AT3G23050.1	15992545
AT4G03190.1	CDY10694	AT3G23050.1	15992545
AT4G03190.1	CDY30781	AT3G23050.1	15992545
AT4G03190.1	CDY63910	AT3G23050.1	15992545
AT4G03190.1	CDX90932	AT4G02570.1	15992545
AT4G03190.1	CDY18013	AT4G02570.1	15992545
AT4G03190.1	CDY21896	AT4G02570.1	15992545
AT4G03190.1	CDY22060	AT4G02570.1	15992545
AT4G03190.1	CDX80545	AT5G25890.1	21734647
AT4G03190.1	CDX87072	AT5G25890.1	21734647
AT4G03190.1	CDX88204	AT5G25890.1	21734647
AT4G03190.1	CDY19790	AT5G25890.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90899	Canola	cytosol	96.93	96.93
AT4G03190.1	Thale cress	cytosol, plastid	83.79	83.93
CDY21947	Canola	plastid, vacuole	85.32	79.87
CDY22108	Canola	endoplasmic reticulum, golgi, plastid, vacuole	85.32	78.25
CDY53998	Canola	cytosol	67.58	67.81
CDY11468	Canola	cytosol	68.09	67.06
CDY68868	Canola	cytosol	61.6	66.85
CDX76680	Canola	cytosol	67.75	66.72
GSMUA_Achr5P26930_001	Banana	cytosol	49.32	62.28
CDX67912	Canola	endoplasmic reticulum, golgi	67.24	61.09
CDX97301	Canola	cytosol	9.56	60.87
GSMUA_Achr3P23850_001	Banana	cytosol	60.07	60.48
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	59.04	58.74
TraesCS1A01G091300.1	Wheat	cytosol	58.87	58.28
Os05t0150500-00	Rice	plastid	58.36	58.26
CDY28523	Canola	cytosol	57.0	58.09
KXG21312	Sorghum	plastid	58.53	58.04
CDY34211	Canola	cytosol	56.83	57.91
Zm00001d010863_P001	Maize	plastid	58.19	57.8
TraesCS1D01G099900.1	Wheat	cytosol	58.7	57.33
CDX89163	Canola	cytosol	60.75	56.87
CDX71968	Canola	cytosol	55.8	56.57
CDY16034	Canola	cytosol	55.46	56.13
CDY26594	Canola	cytosol	55.29	56.06
CDY21068	Canola	cytosol	55.46	55.08
CDY31282	Canola	cytosol	55.12	55.03
HORVU1Hr1G021550.4	Barley	cytosol	58.19	53.12
CDY21439	Canola	cytosol	47.78	46.36
CDX83172	Canola	cytosol, plastid	47.78	46.13
CDY03450	Canola	cytosol	47.1	45.25
CDY34286	Canola	cytosol	46.25	44.5
CDY24941	Canola	cytosol	30.72	30.51
CDY20501	Canola	cytosol	30.72	29.9
CDX74819	Canola	cytosol	30.55	29.83
CDX93223	Canola	cytosol	30.03	29.78
CDX93225	Canola	cytosol	29.86	29.46
CDY07041	Canola	cytosol	29.35	29.05
CDY07040	Canola	cytosol	29.52	28.5
CDY60996	Canola	endoplasmic reticulum, golgi	30.38	25.32

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	UniProt:A0A078IWL5	EnsemblPlants:CDY53774
ProteinID:CDY53774	ProteinID:CDY53774.1	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00011426001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646
PFscan:PS50181	PANTHER:PTHR43944	PANTHER:PTHR43944:SF7	SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047
UniParc:UPI0004EE2E84	SEG:seg	:	:	:	:

Description

BnaC03g73110DBnaC03g73110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWL5]

Coordinates

chrLK033236:+:22785..25520

Molecular Weight (calculated)

65480.4 Da

IEP (calculated)

5.168

GRAVY (calculated)

-0.019

Length

586 amino acids

Sequence
(BLAST)

001: MDLRLPSKVL EHILSFVDSN EDRNSVSLVC KSWFETERRT RKRVFVRNCY AVTPEAVARR FPETRSLTLK GKPHFADYNL VPDGWGGYAW PWIEAMAAKC
101: PSLEELRLKR MVVTDECLEK IAASFKDFKV LVLTSCEGFS TDGLAAIAVA CRNLRELELR ECIVEDIGGD WLSYFPETLT SLVSLDFSCL DSEVKLSDLE
201: RLLSRSPNLK SLKLNRAVSL DALGSLLRLA PQLVELGTGS FSDKLDQEAV AKLSQAFSEL KELKSLSGLW DVLPEYIPLL YSVCPGLTSL NLSYATVQMS
301: DLVELITGCS NLQKLWVMDL IEDKGLEVVA SSCKELRELR VFPSGAEGLN DTNVAMTEQG LVSVSEGCPN LESVLYFCVQ FTNAAMVTIA RNRPNLTCFR
401: LCVMEPFAPD HKTQQPLDEG FKAIVERCKD LQRLSVSGLL TDKAFEYIGT HGKKLRMLSI AFAGDSDLML HHLLSGCESL NKLEIRDCPF GDTALLENAA
501: KLETMRSLWM SSCCVSFGAC KLLSPKMPKL NVEVIDEHPL ETRPDSSPVE RIYIYRTLAG PRLDMPEFVW TIQKNPEIGV SHLAIK

Best Arabidopsis Sequence Match ( AT4G03190.1 )
(BLAST)

001: MGLRFPPKVL EHILSFIDSN EDRNSVSLVC KSWFETERKT RKRVFVGNCY AVSPAAVTRR FPEMRSLTLK GKPHFADYNL VPDGWGGYAW PWIEAMAAKS
101: SSLEEIRMKR MVVTDECLEK IAASFKDFKV LVLTSCEGFS TDGIAAIAAT CRNLRVLELR ECIVEDLGGD WLSYFPESST SLVSLDFSCL DSEVKISDLE
201: RLVSRSPNLK SLKLNPAVTL DGLVSLLRCA PQLTELGTGS FAAQLKPEAF SKLSEAFSNC KQLQSLSGLW DVLPEYLPAL YSVCPGLTSL NLSYATVRMP
301: DLVELLRRCS KLQKLWVMDL IEDKGLEAVA SYCKELRELR VFPSEPDLDA TNIPLTEQGL VFVSKGCRKL ESVLYFCVQF TNAALFTIAR KRPNLKCFRL
401: CVIEPFAPDY KTNEPLDKGF KAIAEGCRDL RRLSVSGLLS DKAFKYIGKH AKKVRMLSIA FAGDSDLMLH HLLSGCESLK KLEIRDCPFG DTALLEHAAK
501: LETMRSLWMS SCFVSFGACK LLSQKMPRLN VEVIDEHPPE SRPESSPVER IYIYRTVAGP RMDTPEFVWT IHKNPENGVS HLAIK

Arabidopsis Description

GRH1GRR1-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR12]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.