Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX67912 | nucleus |
| CDX68112 | |
| CDX71968 | |
| CDX73212 | |
| CDX76680 | nucleus |
| CDX80168 | |
| CDX80545 | |
| CDX80590 | |
| CDX85931 | |
| CDX87072 | |
| CDX87307 | |
| CDX87650 | |
| CDX87863 | |
| CDX88204 | |
| CDX89163 | nucleus |
| CDX89832 | |
| CDX90899 | |
| CDX90932 | |
| CDY03088 | |
| CDY06836 | |
| CDY10068 | |
| CDY11468 | nucleus |
| CDY13521 | |
| CDY15493 | |
| CDY16034 | |
| CDY17621 | |
| CDY18013 | |
| CDY18214 | |
| CDY19790 | |
| CDY21068 | |
| CDY21896 | |
| CDY21947 | |
| CDY22060 | |
| CDY22108 | |
| CDY22876 | |
| CDY25909 | |
| CDY26594 | |
| CDY27511 | |
| CDY28523 | |
| CDY31282 | |
| CDY31545 | |
| CDY32537 | |
| CDY33844 | |
| CDY34211 | |
| CDY38297 | |
| CDY39073 | |
| CDY39982 | |
| CDY46538 | |
| CDY47946 | |
| CDY48005 | |
| CDY53439 | |
| CDY53774 | |
| CDY53998 | nucleus |
| CDY61501 | |
| CDY63072 | |
| CDY68868 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10694 | Canola | mitochondrion | 63.82 | 90.23 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 84.15 | 87.34 |
| AT3G23050.1 | Thale cress | cytosol, nucleus, plastid | 85.37 | 86.42 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 83.74 | 85.83 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 83.74 | 85.83 |
| CDY47148 | Canola | nucleus | 71.95 | 75.97 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 71.54 | 75.54 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 71.14 | 72.02 |
| KRH34377 | Soybean | nucleus | 69.92 | 71.97 |
| Solyc09g083290.2.1 | Tomato | nucleus | 67.07 | 69.92 |
| PGSC0003DMT400015610 | Potato | nucleus | 65.85 | 68.07 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 61.79 | 66.67 |
| CDY32537 | Canola | nucleus | 61.79 | 66.67 |
| CDX89832 | Canola | nucleus | 59.76 | 65.62 |
| CDY18214 | Canola | nucleus | 58.94 | 64.73 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 60.16 | 64.63 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 60.57 | 64.5 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 60.98 | 63.56 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 59.35 | 61.6 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 60.98 | 61.48 |
| GSMUA_Achr10P... | Banana | nucleus | 60.16 | 61.41 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 58.94 | 59.67 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 57.32 | 58.51 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 58.94 | 58.47 |
| TraesCS5D01G069300.1 | Wheat | nucleus | 58.54 | 57.14 |
| TraesCS5B01G058500.1 | Wheat | nucleus | 58.54 | 57.14 |
| TraesCS5A01G058600.1 | Wheat | nucleus | 58.54 | 56.92 |
| Os03t0742900-01 | Rice | vacuole | 52.44 | 54.66 |
| TraesCS5D01G392000.1 | Wheat | nucleus | 50.81 | 53.88 |
| TraesCS5B01G386800.1 | Wheat | nucleus | 50.81 | 53.42 |
| TraesCS5A01G382600.1 | Wheat | nucleus | 50.41 | 53.22 |
| EER90896 | Sorghum | nucleus | 50.41 | 52.77 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 39.84 | 52.69 |
| Zm00001d033976_P002 | Maize | nucleus | 50.41 | 52.32 |
| HORVU5Hr1G094220.1 | Barley | nucleus | 50.41 | 52.32 |
| CDY50750 | Canola | nucleus, plastid | 61.79 | 52.23 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 38.21 | 52.22 |
| HORVU5Hr1G014300.4 | Barley | nucleus | 58.54 | 52.17 |
| TraesCS5B01G381900.1 | Wheat | cytosol, mitochondrion, nucleus | 53.25 | 51.78 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 53.25 | 51.78 |
| Zm00001d013302_P002 | Maize | nucleus | 47.97 | 51.75 |
| KRG92429 | Soybean | cytosol, nucleus, plastid | 69.51 | 51.66 |
| CDY10069 | Canola | nucleus | 38.62 | 51.63 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 39.02 | 51.61 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 39.84 | 51.31 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 39.84 | 51.31 |
| EES17334 | Sorghum | cytosol | 58.54 | 51.25 |
| Os03t0633500-01 | Rice | cytosol | 48.37 | 51.07 |
| CDX94876 | Canola | nucleus | 35.37 | 50.88 |
| CDY40881 | Canola | cytosol | 37.8 | 50.82 |
| Os12t0601300-01 | Rice | nucleus | 56.91 | 50.54 |
| CDX92972 | Canola | nucleus | 34.96 | 50.29 |
| CDY10692 | Canola | nucleus | 34.96 | 50.0 |
| CDY40837 | Canola | nucleus | 34.55 | 49.71 |
| CDY35493 | Canola | nucleus | 34.55 | 49.71 |
| CDY10346 | Canola | nucleus | 34.55 | 49.42 |
| CDY53305 | Canola | cytosol | 30.89 | 48.41 |
| CDY36883 | Canola | nucleus | 33.74 | 48.26 |
| OQU91311 | Sorghum | cytosol, mitochondrion, nucleus | 51.63 | 48.11 |
| CDY53735 | Canola | nucleus | 33.33 | 47.67 |
| CDY50113 | Canola | cytosol, nucleus, plastid | 34.96 | 47.51 |
| CDX82428 | Canola | cytosol, nucleus, plastid | 36.99 | 46.91 |
| CDX75834 | Canola | cytosol, nucleus, plastid | 36.18 | 45.88 |
| CDY20135 | Canola | cytosol, nucleus, plastid | 35.37 | 44.16 |
| CDY21845 | Canola | cytosol, extracellular, nucleus | 35.37 | 44.16 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 50.41 | 44.13 |
| CDY06836 | Canola | nucleus | 44.72 | 43.65 |
| CDY68807 | Canola | nucleus | 33.33 | 41.84 |
| CDY71748 | Canola | cytosol, nucleus, plastid | 29.27 | 41.62 |
| CDY26042 | Canola | nucleus | 32.52 | 40.82 |
| CDY25617 | Canola | nucleus | 43.9 | 40.6 |
| TraesCS5D01G388300.2 | Wheat | cytosol | 51.63 | 40.32 |
| CDX89499 | Canola | nucleus | 43.09 | 39.11 |
| TraesCS5A01G378300.2 | Wheat | cytosol, mitochondrion, nucleus | 48.37 | 39.02 |
| CDY37837 | Canola | mitochondrion | 46.75 | 38.85 |
| Zm00001d041416_P001 | Maize | nucleus | 54.06 | 38.66 |
| CDY68170 | Canola | nucleus, plastid | 48.78 | 38.59 |
| CDY18679 | Canola | plastid | 47.97 | 37.82 |
| CDY53800 | Canola | nucleus | 28.86 | 37.77 |
| CDY63072 | Canola | nucleus | 60.98 | 37.69 |
| CDY45607 | Canola | cytosol, nucleus, plastid | 47.56 | 35.56 |
| CDY08767 | Canola | cytosol, nucleus, plastid | 47.97 | 35.54 |
| CDY66936 | Canola | cytosol, nucleus, plastid | 39.43 | 35.14 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078FBH1 | UniProt:A0A078FBH1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY10349 | ProteinID:CDY10349 | ProteinID:CDY10349.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00032242001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF89 | SUPFAM:SSF54277 | SignalP:SignalP-noTM |
| UniParc:UPI0004EEC362 | SEG:seg | : | : | : | : |
Description
BnaC05g29300DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBH1]
Coordinates
chrLK032002:+:846876..858857
Molecular Weight (calculated)
26905.3 Da
IEP (calculated)
7.979
GRAVY (calculated)
-0.343
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MNIVYINIFY ILYATELCLG LPGGAEANEN LAKSAVGNKR GFSETVDLML NLQSNKEGAV DLNNVASASK ETTLLKDPAK PPAKAQVVGW PPVRNYRKNI
101: ITQQKTSGKE EASSEKAGNS GGGASGAALV KVSMDGAPYL RKVDLKMYKS YQDLSDALAK MFSSFTMGNY GAQGMIDFMN ESKLMDLLNS SDYVPSYEDK
201: DSDWMLVGDV PWEMFVDSCK RLRIMKGAEA IGLAPRAMEK YCKNRS
101: ITQQKTSGKE EASSEKAGNS GGGASGAALV KVSMDGAPYL RKVDLKMYKS YQDLSDALAK MFSSFTMGNY GAQGMIDFMN ESKLMDLLNS SDYVPSYEDK
201: DSDWMLVGDV PWEMFVDSCK RLRIMKGAEA IGLAPRAMEK YCKNRS
001: MIGQLMNLKA TELCLGLPGG AEAVESPAKS AVGSKRGFSE TVDLMLNLQS NKEGSVDLKN VSAVPKEKTT LKDPSKPPAK AQVVGWPPVR NYRKNMMTQQ
101: KTSSGAEEAS SEKAGNFGGG AAGAGLVKVS MDGAPYLRKV DLKMYKSYQD LSDALAKMFS SFTMGNYGAQ GMIDFMNESK LMNLLNSSEY VPSYEDKDGD
201: WMLVGDVPWE MFVESCKRLR IMKGSEAVGL APRAMEKYCK NRS
101: KTSSGAEEAS SEKAGNFGGG AAGAGLVKVS MDGAPYLRKV DLKMYKSYQD LSDALAKMFS SFTMGNYGAQ GMIDFMNESK LMNLLNSSEY VPSYEDKDGD
201: WMLVGDVPWE MFVESCKRLR IMKGSEAVGL APRAMEKYCK NRS
Arabidopsis Description
IAA7Auxin-responsive protein IAA7 [Source:UniProtKB/Swiss-Prot;Acc:Q38825]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.