Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY61501 | Canola | nucleus, plastid | 96.0 | 96.0 |
| AT5G57420.1 | Thale cress | nucleus, plastid | 78.29 | 80.12 |
| HORVU2Hr1G112440.1 | Barley | cytosol, nucleus | 25.71 | 63.38 |
| CDY25909 | Canola | nucleus, plastid | 61.71 | 62.07 |
| CDY38297 | Canola | nucleus, plastid | 62.29 | 60.56 |
| VIT_11s0052g00870.t01 | Wine grape | nucleus | 50.86 | 52.98 |
| PGSC0003DMT400093571 | Potato | nucleus | 34.29 | 51.72 |
| Solyc07g019450.2.1 | Tomato | nucleus, plastid | 42.86 | 51.02 |
| KRH33583 | Soybean | cytosol, nucleus | 30.86 | 50.94 |
| GSMUA_Achr6P03870_001 | Banana | cytosol | 37.14 | 50.39 |
| TraesCS2B01G534500.1 | Wheat | nucleus, plastid | 44.57 | 47.27 |
| TraesCS2D01G506900.1 | Wheat | nucleus, plastid | 44.57 | 46.99 |
| GSMUA_Achr7P16390_001 | Banana | nucleus | 46.29 | 46.29 |
| Os04t0653300-00 | Rice | nucleus | 44.57 | 46.15 |
| TraesCS2A01G506100.1 | Wheat | nucleus, plastid | 44.0 | 46.11 |
| GSMUA_Achr10P... | Banana | nucleus | 43.43 | 44.71 |
| EES11567 | Sorghum | cytosol, plastid | 40.0 | 41.92 |
| Zm00001d026480_P001 | Maize | nucleus | 40.0 | 41.42 |
| KRG90334 | Soybean | cytosol, plastid | 32.57 | 40.71 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078IDG2 | UniProt:A0A078IDG2 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY47946 | ProteinID:CDY47946 | ProteinID:CDY47946.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00088561001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF7 | UniParc:UPI0004EEB90C | SEG:seg |
Description
BnaA02g08100DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDG2]
Coordinates
chrLK032745:+:152291..153249
Molecular Weight (calculated)
19668.2 Da
IEP (calculated)
8.508
GRAVY (calculated)
-0.554
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNFEPHSQE SLKRRFHQDN TTTHQPRETT KRTTSFLPKS ISTNPNISSS SGAAGRFSAF GLNVDDDLVS SVVPPVTVVL EGRSICQRIR LDKHESYQTL
101: ALALRQMFVD GADSTSETKD LDLSNAIPGH IIAYEDMEND LLLAGDLTWK DFVRVAKRIR ILPVKGNTRK VRRNE
101: ALALRQMFVD GADSTSETKD LDLSNAIPGH IIAYEDMEND LLLAGDLTWK DFVRVAKRIR ILPVKGNTRK VRRNE
001: MNSFEPQSQD SLQRRFHQDN STTQQPRDTT TPFIPKPASK NHNNSNSSSG AAGRSFQGFG LNVEDDLVSS VVPPVTVVLE GRSICQRISL DKHGSYQSLA
101: SALRQMFVDG ADSTDDLDLS NAIPGHLIAY EDMENDLLLA GDLTWKDFVR VAKRIRILPV KGNTRQVKRN E
101: SALRQMFVDG ADSTDDLDLS NAIPGHLIAY EDMENDLLLA GDLTWKDFVR VAKRIRILPV KGNTRQVKRN E
Arabidopsis Description
IAA33Auxin-responsive protein IAA33 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.