Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018124.1-P | Field mustard | nucleus | 98.74 | 98.56 |
| CDY24168 | Canola | nucleus | 91.7 | 90.23 |
| CDY49005 | Canola | nucleus | 81.41 | 80.97 |
| CDX94777 | Canola | nucleus | 80.87 | 80.43 |
| CDY41720 | Canola | nucleus | 77.08 | 77.64 |
| CDY54111 | Canola | nucleus | 79.42 | 77.6 |
| CDY53570 | Canola | nucleus | 69.68 | 77.05 |
| CDY55738 | Canola | nucleus | 71.66 | 73.52 |
| CDX94748 | Canola | endoplasmic reticulum, vacuole | 44.58 | 66.76 |
| CDY21993 | Canola | nucleus | 60.47 | 61.47 |
| CDY48583 | Canola | nucleus | 60.11 | 60.88 |
| CDX94484 | Canola | nucleus | 67.51 | 59.74 |
| CDY67714 | Canola | nucleus | 57.22 | 59.7 |
| CDY24162 | Canola | nucleus | 68.59 | 58.46 |
| CDY69758 | Canola | nucleus | 41.34 | 55.05 |
| CDX94528 | Canola | nucleus | 64.62 | 53.51 |
| AT1G34390.1 | Thale cress | nucleus | 51.81 | 47.99 |
| AT1G35240.1 | Thale cress | nucleus | 50.9 | 47.64 |
| AT1G34410.1 | Thale cress | nucleus | 51.62 | 47.19 |
| AT1G34310.1 | Thale cress | nucleus | 50.18 | 46.88 |
| AT1G35520.1 | Thale cress | nucleus | 49.82 | 46.54 |
| AT1G35540.1 | Thale cress | nucleus | 50.72 | 46.45 |
| AT1G34170.3 | Thale cress | nucleus | 45.49 | 46.15 |
| CDY47607 | Canola | nucleus | 40.79 | 37.42 |
| CDY10978 | Canola | nucleus | 41.7 | 36.96 |
| CDY50434 | Canola | nucleus | 41.52 | 36.8 |
| CDX80025 | Canola | nucleus | 38.27 | 36.3 |
| CDY03502 | Canola | nucleus | 38.99 | 36.0 |
| CDX95705 | Canola | nucleus | 35.38 | 35.96 |
| VIT_02s0025g01740.t01 | Wine grape | nucleus | 41.52 | 33.72 |
| KRH49135 | Soybean | nucleus | 39.53 | 32.98 |
| KRH75716 | Soybean | nucleus | 40.97 | 32.8 |
| KRH00001 | Soybean | nucleus | 39.17 | 32.68 |
| KRH65922 | Soybean | nucleus | 40.61 | 32.56 |
| Solyc08g008380.2.1 | Tomato | nucleus | 39.35 | 31.92 |
| PGSC0003DMT400031965 | Potato | nucleus | 37.55 | 31.76 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.28 | 31.65 |
| CDY27291 | Canola | nucleus | 35.2 | 31.5 |
| GSMUA_Achr10P... | Banana | nucleus | 37.55 | 31.18 |
| Solyc08g082630.2.1 | Tomato | nucleus | 35.92 | 30.9 |
| GSMUA_Achr2P19760_001 | Banana | nucleus | 36.64 | 30.39 |
| GSMUA_Achr7P24330_001 | Banana | nucleus | 36.46 | 30.33 |
| CDY33603 | Canola | nucleus | 35.38 | 29.65 |
| CDY65065 | Canola | nucleus | 35.2 | 29.5 |
| Os01t0236300-01 | Rice | nucleus | 34.3 | 27.18 |
| EES02172 | Sorghum | nucleus | 33.39 | 26.89 |
| Zm00001d039267_P005 | Maize | nucleus | 31.77 | 25.43 |
| CDX86939 | Canola | nucleus | 38.63 | 25.18 |
| CDY00245 | Canola | nucleus | 38.63 | 25.15 |
| CDX87230 | Canola | nucleus | 37.55 | 25.12 |
| TraesCS3B01G190100.1 | Wheat | nucleus | 34.12 | 24.93 |
| TraesCS3D01G166700.1 | Wheat | nucleus | 34.12 | 24.93 |
| TraesCS3A01G159200.1 | Wheat | nucleus | 34.12 | 24.9 |
| HORVU3Hr1G032230.6 | Barley | nucleus, plastid | 34.66 | 24.0 |
| CDY67247 | Canola | nucleus | 36.82 | 23.97 |
| CDY16798 | Canola | nucleus | 37.73 | 23.83 |
| CDY39274 | Canola | nucleus | 32.49 | 23.11 |
| CDY07460 | Canola | nucleus | 32.49 | 23.05 |
| CDY31545 | Canola | nucleus | 30.69 | 22.46 |
| CDX80168 | Canola | nucleus | 30.51 | 22.27 |
| CDY53537 | Canola | nucleus | 31.59 | 21.5 |
| CDX74594 | Canola | nucleus | 31.59 | 21.37 |
| CDY12048 | Canola | nucleus | 30.69 | 20.07 |
| CDX90245 | Canola | nucleus | 30.69 | 19.95 |
| CDY09598 | Canola | nucleus | 31.05 | 19.77 |
| CDY02285 | Canola | nucleus | 31.05 | 19.7 |
| CDX83741 | Canola | nucleus | 29.24 | 19.15 |
| CDY62586 | Canola | nucleus | 29.06 | 19.03 |
| CDY61164 | Canola | nucleus | 29.42 | 18.93 |
| CDY01393 | Canola | nucleus | 29.42 | 18.84 |
| CDY29392 | Canola | nucleus | 29.24 | 18.49 |
| CDY39348 | Canola | nucleus | 28.88 | 18.2 |
| CDX96672 | Canola | nucleus | 31.23 | 16.96 |
| CDX83778 | Canola | nucleus | 31.23 | 16.96 |
| CDY26690 | Canola | nucleus | 31.41 | 16.59 |
| CDY41030 | Canola | nucleus | 31.23 | 16.35 |
| CDX92437 | Canola | nucleus | 29.78 | 15.87 |
| CDY16560 | Canola | nucleus | 29.78 | 15.83 |
| CDY45069 | Canola | nucleus | 29.96 | 14.91 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | GO:A0A078HEV3 | UniProt:A0A078HEV3 |
| InterPro:Auxin_resp | InterPro:B3_DNA-bd | EnsemblPlants:CDY36940 | ProteinID:CDY36940 | ProteinID:CDY36940.1 | InterPro:DNA-bd_pseudobarrel_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
| GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00063085001 | InterPro:IPR000270 | InterPro:IPR003340 |
| InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 |
| PANTHER:PTHR31384 | PANTHER:PTHR31384:SF1 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | UniParc:UPI0004EEA4C1 |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g17250DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078HEV3]
Coordinates
chrLK032387:+:298098..301076
Molecular Weight (calculated)
62694.7 Da
IEP (calculated)
7.006
GRAVY (calculated)
-0.460
Length
554 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDQIMHVQ PEFLATGGTN NYLYDQLWKL CAGPLFDPPK IGEELVASIN DELCQLKPVF NIPSKIRCNV FSIKLKVETT TDEIYAEISL LPDTSEVEIP
101: TSKCENNIQN IKCFTKVLSA SDTSKKGGFV LNKRHAIECL PPLDMSHLTP SQEINATDIH GHEWKFKHAL KGTPKRHLFT SGWNEFAKAK KLVVGDSFIF
201: LRGENGESRV GIKKAAHHQQ ENIPSSIISK ESMHHGVVAT ALNAIKNKCM FVVFYKPRSS QFVVNIDKFR DGVNKKFSIG SRFLMKFEGK DFNEIRDFST
301: HWKDSEWRCL EVQWDEAATI PRPDKVSPWE IEPLTHSSDI LKSGSNMWVP TLTQGQEVGH SSIQSSMSYS FATTMSKPNY NEQMVQAMKE TSTTTATTSY
401: RLFGVDLKVP AKTKDSIEPI NSYKKSKISK IFEEEKVDHI QTRSHTKVRM EGAMERTVDL SIFDGYNQLI DELERLFDIK GKLHIHNQWK IVFINADGDI
501: MLLGDDPWPK FCNTAKEIFI CSKNDAKIGD ADNKFSEGDP ILTTTNLPPD VNNN
101: TSKCENNIQN IKCFTKVLSA SDTSKKGGFV LNKRHAIECL PPLDMSHLTP SQEINATDIH GHEWKFKHAL KGTPKRHLFT SGWNEFAKAK KLVVGDSFIF
201: LRGENGESRV GIKKAAHHQQ ENIPSSIISK ESMHHGVVAT ALNAIKNKCM FVVFYKPRSS QFVVNIDKFR DGVNKKFSIG SRFLMKFEGK DFNEIRDFST
301: HWKDSEWRCL EVQWDEAATI PRPDKVSPWE IEPLTHSSDI LKSGSNMWVP TLTQGQEVGH SSIQSSMSYS FATTMSKPNY NEQMVQAMKE TSTTTATTSY
401: RLFGVDLKVP AKTKDSIEPI NSYKKSKISK IFEEEKVDHI QTRSHTKVRM EGAMERTVDL SIFDGYNQLI DELERLFDIK GKLHIHNQWK IVFINADGDI
501: MLLGDDPWPK FCNTAKEIFI CSKNDAKIGD ADNKFSEGDP ILTTTNLPPD VNNN
001: MESGNIVNAQ PELSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGEKIYYFP QGNIELVEAS TREELNELKP ICDLPSKLQC RVIAIQLKVE NNSDETYAEI
101: TLMPDTTQVV IPTQNENQFR PLVNSFTKVL TASDTSGGFF VPKKHAIECL PPLDMSQPLP TQELLATDLH GNQWRFNHNY RGTPQRHLLT TGWNAFTTSK
201: KLVAGDVIVF VRGETGELRV GIRRAGHQQG NIPSSIISIE SMRHGVIASA KHAFDNQCMF IVVYKPRSSQ FIVSYDKFLD AVNNKFNVGS RFTMRFEGDD
301: FSERRYFGTI IGVSDFSPHW KCSEWRNLEV QWDEFASFSR PNKVSPWEIE HLMPALNVPR PSLLKNKRLR EVNEIGSSSS HLLPPILTQG QEIGQLSVAS
401: PMNISLTYRD TTEDVMNPSR LLMSYPVQPM PKLNYNNQMV TQIEENITTK TGTNFRLFGV SLVTPSVIKD PIEEIGSEIS KLTEGKKFGQ SQTLRSPTEI
501: QSKQFSSTRT CTKVQMQGVT IERAVDLSVL NGYDQLILEL EELFDLKGQL QTRNQWEIAF TDSDDDKMLV GDDPWPEFCN MVKKILIFKR GGQKLEVQ
101: TLMPDTTQVV IPTQNENQFR PLVNSFTKVL TASDTSGGFF VPKKHAIECL PPLDMSQPLP TQELLATDLH GNQWRFNHNY RGTPQRHLLT TGWNAFTTSK
201: KLVAGDVIVF VRGETGELRV GIRRAGHQQG NIPSSIISIE SMRHGVIASA KHAFDNQCMF IVVYKPRSSQ FIVSYDKFLD AVNNKFNVGS RFTMRFEGDD
301: FSERRYFGTI IGVSDFSPHW KCSEWRNLEV QWDEFASFSR PNKVSPWEIE HLMPALNVPR PSLLKNKRLR EVNEIGSSSS HLLPPILTQG QEIGQLSVAS
401: PMNISLTYRD TTEDVMNPSR LLMSYPVQPM PKLNYNNQMV TQIEENITTK TGTNFRLFGV SLVTPSVIKD PIEEIGSEIS KLTEGKKFGQ SQTLRSPTEI
501: QSKQFSSTRT CTKVQMQGVT IERAVDLSVL NGYDQLILEL EELFDLKGQL QTRNQWEIAF TDSDDDKMLV GDDPWPEFCN MVKKILIFKR GGQKLEVQ
Arabidopsis Description
ARF22Auxin response factor 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.