CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74594
CDX83741
CDX87307
CDX89832
CDX92437
CDY01393
CDY10068
CDY15493
CDY16560
CDY18214
CDY25909
CDY29392
CDY32537
CDY36883
CDY38297
CDY39348
CDY39982
CDY45069
CDY47946
CDY53537
CDY53735
CDY61164
CDY61501
CDY62586
CDY63072

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46990.1	CDX89832	AT1G04250.1	21734647
AT2G46990.1	CDY10068	AT1G04250.1	21734647
AT2G46990.1	CDY15493	AT1G04250.1	21734647
AT2G46990.1	CDY18214	AT1G04250.1	21734647
AT2G46990.1	CDY32537	AT1G04250.1	21734647
AT2G46990.1	CDY63072	AT1G04250.1	21734647
AT2G46990.1	CDX83741	AT1G19850.1	21734647
AT2G46990.1	CDY01393	AT1G19850.1	21734647
AT2G46990.1	CDY29392	AT1G19850.1	21734647
AT2G46990.1	CDY39348	AT1G19850.1	21734647
AT2G46990.1	CDY61164	AT1G19850.1	21734647
AT2G46990.1	CDY62586	AT1G19850.1	21734647
AT2G46990.1	CDX87307	AT1G80390.1	21734647
AT2G46990.1	CDY39982	AT1G80390.1	21734647
AT2G46990.1	CDY36883	AT4G14560.1	9342315
AT2G46990.1	CDY53735	AT4G14560.1	9342315
AT2G46990.1	CDX92437	AT5G20730.1	21734647
AT2G46990.1	CDY16560	AT5G20730.1	21734647
AT2G46990.1	CDY45069	AT5G20730.1	21734647
AT2G46990.1	CDX74594	AT5G37020.1	21734647
AT2G46990.1	CDY53537	AT5G37020.1	21734647
AT2G46990.1	CDY25909	AT5G57420.1	21734647
AT2G46990.1	CDY38297	AT5G57420.1	21734647
AT2G46990.1	CDY47946	AT5G57420.1	21734647
AT2G46990.1	CDY61501	AT5G57420.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040476.1-P	Field mustard	cytosol, plastid	95.98	95.98
CDY48005	Canola	cytosol, plastid	95.98	95.98
AT2G46990.1	Thale cress	plastid	87.36	86.86
CDX67874	Canola	plastid	81.03	81.5
CDY25089	Canola	plastid	79.89	80.35
CDY11402	Canola	plastid	81.03	79.66
CDY58757	Canola	plastid	77.59	78.49
CDY46895	Canola	cytosol	22.99	55.56
VIT_07s0005g02550.t01	Wine grape	plastid	50.0	49.71
GSMUA_Achr8P29850_001	Banana	nucleus	46.55	46.02
KRH33660	Soybean	plastid	45.4	44.63
KRG96613	Soybean	plastid	45.4	44.63
KRH68346	Soybean	plastid	45.4	43.89
KRH69143	Soybean	plastid	44.83	43.33
GSMUA_Achr9P16800_001	Banana	nucleus	42.53	42.53
Os01t0286900-01	Rice	nucleus	27.59	41.74
CDX82361	Canola	cytosol, plastid	36.78	40.76
CDY71609	Canola	nucleus, plastid	36.78	40.76
CDX92140	Canola	nucleus, plastid	36.78	40.51
CDX95843	Canola	plastid	35.63	40.0
EES00605	Sorghum	nucleus, plastid	39.66	35.75
Zm00001d008201_P001	Maize	cytosol	25.86	34.62
Zm00001d040541_P001	Maize	nucleus, plastid	34.48	33.15
Os02t0723400-02	Rice	nucleus	38.51	32.68
TraesCS1D01G084100.1	Wheat	nucleus, plastid	38.51	32.37
CDY46058	Canola	plastid	29.89	31.14
CDX87072	Canola	cytosol	28.16	28.0
TraesCS1B01G100300.1	Wheat	plastid	37.93	27.85
CDX88204	Canola	cytosol, nucleus, peroxisome	27.01	27.01
CDX80545	Canola	cytosol, nucleus, plastid	27.01	27.01
HORVU1Hr1G017770.6	Barley	cytosol, mitochondrion, vacuole	31.61	26.57
CDY51701	Canola	nucleus	30.46	26.37
TraesCS1A01G082700.2	Wheat	plastid	39.08	25.86
CDY19790	Canola	cytosol	27.01	24.1
CDY18243	Canola	nucleus	31.03	23.38
CDY38374	Canola	nucleus	31.61	23.11
CDX89814	Canola	nucleus	31.03	22.98
CDY53196	Canola	nucleus	29.89	22.91
CDY35203	Canola	nucleus	31.61	22.63
CDY19477	Canola	nucleus	29.89	22.13
CDY17158	Canola	nucleus	29.89	22.03
CDY59182	Canola	nucleus	28.16	21.78
CDX89844	Canola	cytosol, nucleus, plastid	33.91	21.77
CDY18205	Canola	cytosol, nucleus, plastid	32.76	21.03
CDX79522	Canola	nucleus	29.31	20.73
CDX84693	Canola	nucleus	28.16	20.25
CDX87863	Canola	nucleus	28.16	19.29
CDX75231	Canola	nucleus	24.71	18.61
CDY33844	Canola	nucleus	26.44	18.18
CDY22876	Canola	nucleus	25.86	17.79
CDY13478	Canola	nucleus	24.71	17.7
CDX68829	Canola	nucleus	22.99	17.54
CDX72351	Canola	nucleus	24.71	17.41
CDY46538	Canola	nucleus	27.01	17.41
CDY53439	Canola	nucleus	27.01	17.22
CDY34957	Canola	nucleus	26.44	17.1
CDY64626	Canola	cytosol	25.86	16.73
CDX75884	Canola	cytosol	25.86	16.61
CDX82399	Canola	nucleus	25.86	16.54
CDY43104	Canola	nucleus	25.29	16.48
CDX92077	Canola	nucleus	25.29	15.44
CDX92888	Canola	nucleus	33.33	14.32

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	GO:A0A078GQD2	UniProt:A0A078GQD2	InterPro:AUX/IAA_dom	InterPro:AUX_IAA
EnsemblPlants:CDY27511	ProteinID:CDY27511	ProteinID:CDY27511.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00038185001	InterPro:IPR000270	InterPro:PB1_dom
PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF15	SUPFAM:SSF54277	UniParc:UPI0004EB1C3F
SEG:seg	:	:	:	:	:

Description

BnaC04g51520DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQD2]

Coordinates

chrLK032205:-:447852..448902

Molecular Weight (calculated)

19299.4 Da

IEP (calculated)

4.507

GRAVY (calculated)

-0.422

Length

174 amino acids

Sequence
(BLAST)

001: MGRGRSSSSS SSIESTSKSN PYGGSSNTRN LSTDLRLGLS FGASSGTQYF NGGYGYSVVD PAADYTVAVA EEEEEENECN SVGSFYVKVN MEGVPIGRKI
101: DLMSLNGYHE LIRTLDFMFN ASILWADDEE MCGQKSHVLT YADKEGDWMM VGDVPWEMFL STVRRLKISR AYHY

Best Arabidopsis Sequence Match ( AT2G46990.1 )
(BLAST)

001: MGRGRSSSSS SIESSSKSNP FGASSSTRNL STDLRLGLSF GTSSGTQYFN GGYGYSVAAP AVEDAEYVAA VEEEEENECN SVGSFYVKVN MEGVPIGRKI
101: DLMSLNGYRD LIRTLDFMFN ASILWAEEED MCNEKSHVLT YADKEGDWMM VGDVPWEMFL STVRRLKISR ANYHY

Arabidopsis Description

IAA20Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A178W181]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.