Factsheet for VIT_07s0005g02550.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g01740.t01
VIT_04s0079g00200.t01
VIT_05s0020g04680.t01
VIT_05s0020g04690.t01
VIT_07s0005g02550.t01
VIT_09s0002g03410.t01
VIT_11s0016g00640.t01
VIT_11s0052g00870.t01
VIT_18s0001g13930.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46990.1	VIT_05s0020g04690.t01	AT1G04250.1	21734647
AT2G46990.1	VIT_18s0001g13930.t01	AT1G19850.1	21734647
AT2G46990.1	VIT_05s0020g04680.t01	AT4G14560.1	9342315
AT2G46990.1	VIT_11s0016g00640.t01	AT5G20730.1	21734647
AT2G46990.1	VIT_04s0079g00200.t01	AT5G37020.1	21734647
AT2G46990.1	VIT_11s0052g00870.t01	AT5G57420.1	21734647
AT3G62100.1	VIT_11s0016g00640.t01	AT1G19220.1	21734647
AT3G62100.1	VIT_18s0001g13930.t01	AT1G19850.1	21734647
AT3G62100.1	VIT_02s0025g01740.t01	AT1G34310.1	21734647
AT3G62100.1	VIT_07s0005g02550.t01	AT2G46990.1	21734647
AT3G62100.1	VIT_09s0002g03410.t01	AT3G16500.1	21734647
AT3G62100.1	VIT_05s0020g04690.t01	AT3G23050.1	21734647
AT3G62100.1	VIT_05s0020g04680.t01	AT4G14560.1	21734647
AT3G62100.1	VIT_05s0020g04680.t01	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P29850_001	Banana	nucleus	64.0	63.64
KRH69143	Soybean	plastid	58.29	56.67
KRH33660	Soybean	plastid	57.14	56.5
VIT_05s0020g01070.t01	Wine grape	plastid	63.43	56.06
KRG96613	Soybean	plastid	56.57	55.93
GSMUA_Achr9P16800_001	Banana	nucleus	55.43	55.75
KRH68346	Soybean	plastid	56.57	55.0
CDY25089	Canola	plastid	51.43	52.02
Bra003484.1-P	Field mustard	nucleus, plastid	50.86	51.74
CDX67874	Canola	plastid	50.86	51.45
AT2G46990.1	Thale cress	plastid	51.43	51.43
Os01t0286900-01	Rice	nucleus	33.71	51.3
AT3G62100.1	Thale cress	plastid	50.29	51.16
CDY58757	Canola	plastid	49.14	50.0
CDY48005	Canola	cytosol, plastid	49.71	50.0
CDY27511	Canola	cytosol, plastid	49.71	50.0
Bra040476.1-P	Field mustard	cytosol, plastid	49.71	50.0
CDY11402	Canola	plastid	49.14	48.59
Bra007661.1-P	Field mustard	plastid	49.14	48.59
EES00605	Sorghum	nucleus, plastid	52.57	47.67
Zm00001d040541_P001	Maize	nucleus, plastid	46.86	45.3
Bra014411.1-P	Field mustard	nucleus, plastid	32.57	45.24
Os02t0723400-02	Rice	nucleus	46.29	39.51
TraesCS1D01G084100.1	Wheat	nucleus, plastid	45.14	38.16
TraesCS1B01G100300.1	Wheat	plastid	47.43	35.02
Zm00001d008201_P001	Maize	cytosol	25.71	34.62
TraesCS1A01G082700.2	Wheat	plastid	46.29	30.8
HORVU1Hr1G017770.6	Barley	cytosol, mitochondrion, vacuole	36.0	30.43
VIT_11s0016g05640.t01	Wine grape	cytosol	25.71	24.46
VIT_07s0005g04380.t01	Wine grape	nucleus	40.57	23.2
VIT_05s0049g01970.t01	Wine grape	nucleus	42.29	23.05
VIT_04s0008g05560.t01	Wine grape	extracellular	25.71	19.82
VIT_04s0008g00220.t01	Wine grape	nucleus	32.0	16.23
VIT_09s0002g03410.t01	Wine grape	nucleus	30.29	12.07

Protein Annotations

EntrezGene:100241721	wikigene:100241721	Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA
ProteinID:CBI37051	ProteinID:CBI37051.3	UniProt:D7U2T5	EMBL:FN596502	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	EntrezGene:LOC100241721
wikigene:LOC100241721	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF15
SUPFAM:SSF54277	UniParc:UPI00015CA936	ArrayExpress:VIT_07s0005g02550	EnsemblPlantsGene:VIT_07s0005g02550	EnsemblPlants:VIT_07s0005g02550.t01	unigene:Vvi.15904
RefSeq:XP_002281145	RefSeq:XP_002281145.1	SEG:seg	:	:	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:D7U2T5]

Coordinates

chr7:+:4884903..4889305

Molecular Weight (calculated)

19677.4 Da

IEP (calculated)

6.953

GRAVY (calculated)

-0.357

Length

175 amino acids

Sequence
(BLAST)

001: MGRATNSSSS SIDSSSHPTV SSASSFPRLK RDLSTDLSLG LSISTSDHHY CPSTPREQQS DWPPIKTLLR KALAGEGNKC NDATFFVKVY MEGIPIGRKL
101: DLFAHDGYHA LIRTLDHMFS TTILWAEVDG VLHSEKCHVL TYEDKEGDWM MVGDVPWELF LTTVKRLKIT RVDKY

Best Arabidopsis Sequence Match ( AT3G62100.1 )
(BLAST)

001: MGRGRSSSSS SIESSCKSNP FGVSSSNTRN LSTDLRLGLS FGSSSGQYYN GGDNHEYDGV GAAEEMMIME EEEQNECNSV GSFYVKVNME GVPIGRKIDL
101: LSLNGYHDLI TTLDYMFNAS ILWAEEEDMC SEKSHVLTYA DKEGDWMMVG DVPWEMFLSS VRRLKISRAY HY

Arabidopsis Description

IAA30Auxin-responsive protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.