Factsheet for Bra040476.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002327.1-P
Bra002729.1-P
Bra012190.1-P
Bra015298.1-P
Bra016492.1-P
Bra020125.1-P
Bra025775.1-P
Bra028110.1-P
Bra030560.1-P
Bra032520.1-P
Bra035185.1-P
Bra039732.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46990.1	Bra015298.1-P	AT1G04250.1	21734647
AT2G46990.1	Bra030560.1-P	AT1G04250.1	21734647
AT2G46990.1	Bra032520.1-P	AT1G04250.1	21734647
AT2G46990.1	Bra012190.1-P	AT1G19850.1	21734647
AT2G46990.1	Bra016492.1-P	AT1G19850.1	21734647
AT2G46990.1	Bra025775.1-P	AT1G19850.1	21734647
AT2G46990.1	Bra035185.1-P	AT1G80390.1	21734647
AT2G46990.1	Bra039732.1-P	AT4G14560.1	9342315
AT2G46990.1	Bra002327.1-P	AT5G20730.1	21734647
AT2G46990.1	Bra020125.1-P	AT5G20730.1	21734647
AT2G46990.1	Bra028110.1-P	AT5G37020.1	21734647
AT2G46990.1	Bra002729.1-P	AT5G57420.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48005	Canola	cytosol, plastid	100.0	100.0
CDY27511	Canola	cytosol, plastid	95.98	95.98
AT2G46990.1	Thale cress	plastid	87.93	87.43
Bra003484.1-P	Field mustard	nucleus, plastid	79.89	80.81
Bra007661.1-P	Field mustard	plastid	79.89	78.53
Bra014411.1-P	Field mustard	nucleus, plastid	54.02	74.6
Bra021257.1-P	Field mustard	cytosol	22.41	54.17
VIT_07s0005g02550.t01	Wine grape	plastid	50.0	49.71
GSMUA_Achr8P29850_001	Banana	nucleus	46.55	46.02
KRH33660	Soybean	plastid	45.98	45.2
KRG96613	Soybean	plastid	45.4	44.63
KRH69143	Soybean	plastid	45.4	43.89
KRH68346	Soybean	plastid	45.4	43.89
GSMUA_Achr9P16800_001	Banana	nucleus	43.1	43.1
Os01t0286900-01	Rice	nucleus	27.59	41.74
Bra001670.1-P	Field mustard	nucleus	34.48	40.54
Bra022224.1-P	Field mustard	nucleus, plastid	36.78	40.51
EES00605	Sorghum	nucleus, plastid	39.66	35.75
Zm00001d008201_P001	Maize	cytosol	25.86	34.62
Os02t0723400-02	Rice	nucleus	39.08	33.17
Zm00001d040541_P001	Maize	nucleus, plastid	34.48	33.15
TraesCS1D01G084100.1	Wheat	nucleus, plastid	39.08	32.85
TraesCS1B01G100300.1	Wheat	plastid	38.51	28.27
Bra036557.1-P	Field mustard	nucleus	27.01	26.86
Bra009867.1-P	Field mustard	cytosol	27.01	26.7
HORVU1Hr1G017770.6	Barley	cytosol, mitochondrion, vacuole	31.61	26.57
TraesCS1A01G082700.2	Wheat	plastid	39.66	26.24
Bra015326.1-P	Field mustard	nucleus	31.03	22.98
Bra011045.1-P	Field mustard	nucleus	31.03	22.22
Bra015289.1-P	Field mustard	nucleus	33.33	21.4
Bra005508.1-P	Field mustard	nucleus	29.89	20.47
Bra022934.1-P	Field mustard	nucleus	28.16	20.25
Bra018938.1-P	Field mustard	nucleus	27.01	18.58
Bra011332.1-P	Field mustard	nucleus	24.14	18.18
Bra014303.1-P	Field mustard	nucleus	27.01	17.41
Bra023958.1-P	Field mustard	nucleus	24.14	17.28
Bra021184.1-P	Field mustard	nucleus	26.44	17.1
Bra032503.1-P	Field mustard	nucleus	29.89	16.77
Bra001634.1-P	Field mustard	nucleus	25.86	16.54
Bra022164.1-P	Field mustard	nucleus	25.29	15.44
Bra024187.1-P	Field mustard	plastid	34.48	15.08

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	EnsemblPlantsGene:Bra040476	EnsemblPlants:Bra040476.1
EnsemblPlants:Bra040476.1-P	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009630	GO:GO:0009647	GO:GO:0009653
GO:GO:0009719	GO:GO:0009733	GO:GO:0009734	GO:GO:0009790	GO:GO:0009791	GO:GO:0009987
GO:GO:0010588	GO:GO:0048364	InterPro:IPR000270	UniProt:M4FH98	InterPro:PB1_dom	PFAM:PF02309
PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF15	SUPFAM:SSF54277	UniParc:UPI000254481C	SEG:seg

Description

AT2G46990 (E=1e-070) IAA20 | IAA20 (INDOLE-3-ACETIC ACID INDUCIBLE 20); transcription factor

Coordinates

chrA04:+:18940342..18941203

Molecular Weight (calculated)

19366.6 Da

IEP (calculated)

4.624

GRAVY (calculated)

-0.436

Length

174 amino acids

Sequence
(BLAST)

001: MGRGRSSSSS SSIESTSKSN PYGPSSSTRN LSTDLRLGLS FGASSGTPYF NGGYGYSVVD PTAEYKVAVA EEEEEENECN SVGSFYVKVN MEGVPIGRKI
101: DLMSLNGYHE LIRTLDFMFN ASILWADEEE MCGQKSHVLT YADKEGDWMM VGDVPWEMFL STVRRLKISR AYHY

Best Arabidopsis Sequence Match ( AT2G46990.1 )
(BLAST)

001: MGRGRSSSSS SIESSSKSNP FGASSSTRNL STDLRLGLSF GTSSGTQYFN GGYGYSVAAP AVEDAEYVAA VEEEEENECN SVGSFYVKVN MEGVPIGRKI
101: DLMSLNGYRD LIRTLDFMFN ASILWAEEED MCNEKSHVLT YADKEGDWMM VGDVPWEMFL STVRRLKISR ANYHY

Arabidopsis Description

IAA20Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A178W181]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.