Factsheet for Bra005508.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17158	Canola	nucleus	92.13	99.15
CDY19477	Canola	nucleus	91.73	99.15
AT2G33310.2	Thale cress	nucleus	87.4	89.88
Bra022934.1-P	Field mustard	nucleus	83.86	88.02
Bra015326.1-P	Field mustard	nucleus	67.72	73.19
Bra032503.1-P	Field mustard	nucleus	64.57	52.9
PGSC0003DMT400003784	Potato	nucleus	53.94	50.55
Solyc09g090910.1.1	Tomato	nucleus	53.54	48.23
PGSC0003DMT400075427	Potato	nucleus	43.31	47.41
Solyc12g096980.1.1	Tomato	nucleus	43.31	47.21
VIT_05s0049g01970.t01	Wine grape	nucleus	58.27	46.11
Bra011045.1-P	Field mustard	nucleus	42.13	44.03
Bra021257.1-P	Field mustard	cytosol	11.02	38.89
Bra036557.1-P	Field mustard	nucleus	24.41	35.43
Bra015289.1-P	Field mustard	nucleus	37.01	34.69
Bra009867.1-P	Field mustard	cytosol	24.02	34.66
Bra001670.1-P	Field mustard	nucleus	19.29	33.11
Bra018938.1-P	Field mustard	nucleus	32.68	32.81
Bra022224.1-P	Field mustard	nucleus, plastid	19.68	31.65
Bra014303.1-P	Field mustard	nucleus	33.46	31.48
Bra003484.1-P	Field mustard	nucleus, plastid	20.47	30.23
Bra040476.1-P	Field mustard	cytosol, plastid	20.47	29.89
Bra021184.1-P	Field mustard	nucleus	31.5	29.74
Bra007661.1-P	Field mustard	plastid	20.08	28.81
Bra001634.1-P	Field mustard	nucleus	30.71	28.68
Bra024187.1-P	Field mustard	plastid	42.91	27.39
Bra022164.1-P	Field mustard	nucleus	30.71	27.37
Bra014411.1-P	Field mustard	nucleus, plastid	12.99	26.19
Bra011332.1-P	Field mustard	nucleus	21.26	23.38
Bra023958.1-P	Field mustard	nucleus	20.87	21.81

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	EnsemblPlantsGene:Bra005508	EnsemblPlants:Bra005508.1
EnsemblPlants:Bra005508.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	UniProt:M4CMS0	InterPro:PB1_dom	PFAM:PF02309
PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF6	SUPFAM:SSF54277	UniParc:UPI0002547407	SEG:seg

Description

AT2G33310 (E=6e-082) IAA13 | IAA13; transcription factor

Coordinates

chrA05:+:5877329..5878444

Molecular Weight (calculated)

26932.0 Da

IEP (calculated)

10.139

GRAVY (calculated)

-0.576

Length

254 amino acids

Sequence
(BLAST)

001: MISELEMGKA ESELELGLGL SLGGGTAAQK CRKGGGGGGG GGGTAAKIGK QGGGGAWGER GRLLTAKDFP SVGSKRAADS ASHAGASPPR SSQVVGWPPI
101: GSHRMNSLAA KSAREEEGEA GKKKVKDDET KDVNKKVQVG FIKVNMDGVA IGRKVDLNAH SSYENLAQTL EDMFFRGNPG TIGLTGQFTK PLRLLDGSSE
201: FVLTYEDKEG DWMLVGDVPW RMFITSVKRL RVMKTSEANG LAARHQESNE RQRK

Best Arabidopsis Sequence Match ( AT2G33310.1 )
(BLAST)

001: MITELEMGKG ESELELGLGL SLGGGTAAKI GKSGGGGAWG ERGRLLTAKD FPSVGSKRAA DSASHAGSSP PRSSQVVGWP PIGSHRMNSL VNNQATKSAR
101: EEEEAGKKKV KDDEPKDVTK KVNGKVQVGF IKVNMDGVAI GRKVDLNAHS SYENLAQTLE DMFFRTNPGT VGLTSQFTKP LRLLDGSSEF VLTYEDKEGD
201: WMLVGDVPWR MFINSVKRLR VMKTSEANGL AARNQEPNER QRKQPV

Arabidopsis Description

IAA13Auxin-responsive protein IAA13 [Source:UniProtKB/Swiss-Prot;Acc:Q38831]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.