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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400003784 Potato nucleus 93.62 97.42
Solyc12g096980.1.1 Tomato nucleus 53.9 65.24
AT2G33310.2 Thale cress nucleus 50.71 57.89
Bra022934.1-P Field mustard nucleus 49.65 57.85
CDX84693 Canola nucleus 49.65 57.85
CDY19477 Canola nucleus 47.87 57.45
CDY17158 Canola nucleus 47.87 57.2
CDX79522 Canola nucleus 49.65 56.91
VIT_05s0049g01970.t01 Wine grape nucleus 64.54 56.7
AT1G04550.2 Thale cress cytosol 47.87 56.49
CDY59182 Canola nucleus 43.62 54.67
CDY53196 Canola nucleus 43.62 54.19
CDY18243 Canola nucleus 43.97 53.68
Bra005508.1-P Field mustard nucleus 48.23 53.54
CDX89814 Canola nucleus 44.33 53.19
Bra015326.1-P Field mustard nucleus 44.33 53.19
Solyc09g064530.2.1 Tomato nucleus 47.87 42.19
Bra032503.1-P Field mustard nucleus 43.26 39.35
Solyc07g008020.2.1 Tomato cytosol 20.21 29.08
Solyc03g121060.2.1 Tomato nucleus 28.01 27.53
Solyc06g066020.2.1 Tomato cytoskeleton, cytosol, nucleus 22.34 26.03
Solyc08g021820.2.1 Tomato nucleus 18.79 23.35
Protein Annotations
Gene3D:3.10.20.90MapMan:35.1InterPro:AUX/IAA_domInterPro:AUX_IAAGO:GO:0003674GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009719GO:GO:0009734GO:GO:0009987InterPro:IPR000270UniProt:K4CWB7
InterPro:PB1_domPFAM:PF02309PFscan:PS51745PANTHER:PTHR31734PANTHER:PTHR31734:SF6SUPFAM:SSF54277
EnsemblPlantsGene:Solyc09g090910.1EnsemblPlants:Solyc09g090910.1.1UniParc:UPI000276B19CSEG:seg::
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:K4CWB7]
Coordinates
chr9:-:70314836..70317752
Molecular Weight (calculated)
30552.3 Da
IEP (calculated)
8.977
GRAVY (calculated)
-0.659
Length
282 amino acids
Sequence
(BLAST)
001: MEPILSEKGT KMEQDYNMGM CSEDETELEL GLGLSLNSGG GGGGVGGKTK KSPWGEYGRI LTAKDFPNGF SAKRSINVGV SGTKRAADFA GSTTEVGSPP
101: TGASQVVGWP PIRAYRMNSL VNQSKVLNAD DEKGVGGNDK KEHSKKKINH GNTKDDAASV KEKGHLGFVK VNMDGLPIGR KVDLNAHTCY ESLAETLEDM
201: FFKSTKSGEK EQATKSFKLL DGSSEFVLTY EDKEGDWMLV GDVPFGMFLN TVKRLRIMRT SEANGLAPRI PQKQEKHKGK PI
Best Arabidopsis Sequence Match ( AT2G33310.2 )
(BLAST)
001: MITELEMGKG ESELELGLGL SLGGGTAAKI GKSGGGGAWG ERGRLLTAKD FPSVGSKRAA DSASHAGSSP PRSSSQVVGW PPIGSHRMNS LVNNQATKSA
101: REEEEAGKKK VKDDEPKDVT KKVNGKVQVG FIKVNMDGVA IGRKVDLNAH SSYENLAQTL EDMFFRTNPG TVGLTSQFTK PLRLLDGSSE FVLTYEDKEG
201: DWMLVGDVPW RMFINSVKRL RVMKTSEANG LAARNQEPNE RQRKQPV
Arabidopsis Description
IAA13Auxin-responsive protein IAA13 [Source:UniProtKB/Swiss-Prot;Acc:Q38831]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.