Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022934.1-P | Field mustard | nucleus | 95.94 | 97.52 |
| CDX84693 | Canola | nucleus | 95.94 | 97.52 |
| CDY19477 | Canola | nucleus | 88.21 | 92.34 |
| CDY17158 | Canola | nucleus | 88.21 | 91.95 |
| AT2G33310.2 | Thale cress | nucleus | 91.46 | 91.09 |
| CDX89814 | Canola | nucleus | 70.33 | 73.62 |
| CDY18243 | Canola | nucleus | 69.11 | 73.59 |
| CDY53196 | Canola | nucleus | 67.89 | 73.57 |
| CDY59182 | Canola | nucleus | 67.07 | 73.33 |
| PGSC0003DMT400003784 | Potato | nucleus | 57.32 | 52.03 |
| CDY51701 | Canola | nucleus | 41.06 | 50.25 |
| Solyc09g090910.1.1 | Tomato | nucleus | 56.91 | 49.65 |
| PGSC0003DMT400075427 | Potato | nucleus | 45.94 | 48.71 |
| Solyc12g096980.1.1 | Tomato | nucleus | 45.94 | 48.5 |
| VIT_05s0049g01970.t01 | Wine grape | nucleus | 60.57 | 46.42 |
| CDY38374 | Canola | nucleus | 44.31 | 45.8 |
| CDY35203 | Canola | nucleus | 44.31 | 44.86 |
| CDY46895 | Canola | cytosol | 12.2 | 41.67 |
| CDX87072 | Canola | cytosol | 26.42 | 37.14 |
| CDX89844 | Canola | cytosol, nucleus, plastid | 39.43 | 35.79 |
| CDY18205 | Canola | cytosol, nucleus, plastid | 39.02 | 35.42 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 24.8 | 35.06 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 24.39 | 34.48 |
| CDX95843 | Canola | plastid | 21.14 | 33.55 |
| CDY71609 | Canola | nucleus, plastid | 20.73 | 32.48 |
| CDY22876 | Canola | nucleus | 33.33 | 32.41 |
| CDY19790 | Canola | cytosol | 25.61 | 32.31 |
| CDX87863 | Canola | nucleus | 33.33 | 32.28 |
| CDY33844 | Canola | nucleus | 32.93 | 32.02 |
| CDX82361 | Canola | cytosol, plastid | 20.33 | 31.85 |
| CDX92140 | Canola | nucleus, plastid | 20.33 | 31.65 |
| CDY46538 | Canola | nucleus | 33.74 | 30.74 |
| CDY53439 | Canola | nucleus | 33.74 | 30.4 |
| CDY25089 | Canola | plastid | 21.14 | 30.06 |
| CDX67874 | Canola | plastid | 20.73 | 29.48 |
| CDY64626 | Canola | cytosol | 32.11 | 29.37 |
| CDY27511 | Canola | cytosol, plastid | 20.73 | 29.31 |
| CDY48005 | Canola | cytosol, plastid | 20.73 | 29.31 |
| CDY34957 | Canola | nucleus | 31.71 | 29.0 |
| CDY58757 | Canola | plastid | 19.92 | 28.49 |
| CDY43104 | Canola | nucleus | 30.89 | 28.46 |
| CDX75884 | Canola | cytosol | 31.3 | 28.41 |
| CDX82399 | Canola | nucleus | 31.3 | 28.31 |
| CDY11402 | Canola | plastid | 20.33 | 28.25 |
| CDX92888 | Canola | nucleus | 45.53 | 27.65 |
| CDX92077 | Canola | nucleus | 31.3 | 27.02 |
| CDX75231 | Canola | nucleus | 21.95 | 23.38 |
| CDX68829 | Canola | nucleus | 21.54 | 23.25 |
| CDY46058 | Canola | plastid | 15.45 | 22.75 |
| CDY13478 | Canola | nucleus | 21.54 | 21.81 |
| CDX72351 | Canola | nucleus | 21.54 | 21.46 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078CS20 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | EnsemblPlants:CDX79522 |
| ProteinID:CDX79522 | ProteinID:CDX79522.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00132272001 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF6 | SUPFAM:SSF54277 | UniParc:UPI0004EB633F | SEG:seg | : |
Description
BnaC03g18580D
Coordinates
chrLK031818:-:500159..501850
Molecular Weight (calculated)
26715.9 Da
IEP (calculated)
9.939
GRAVY (calculated)
-0.590
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MITELEMGKA ESELELGLGL SLGGGTASKI VKPGGGGAWG ERGRLLTAKD FPSVGSKRAA DSASYAGASP PRSSQVVGWP PIGSHRMNSL VNNQATKSPK
101: EEEEDGKKKA KDDETKDVTK KVNGKVQVGF IKVNMDGVAI GRKVDLNAHS SYENLAHTLE DMFFRTSPGT IGLTGQFTKP LRLLDGSSEF VLTYEDKEGD
201: WMLVGDVPWR MFITSVKRLR VMKTSEANGL AARHQDPKER QRNKPV
101: EEEEDGKKKA KDDETKDVTK KVNGKVQVGF IKVNMDGVAI GRKVDLNAHS SYENLAHTLE DMFFRTSPGT IGLTGQFTKP LRLLDGSSEF VLTYEDKEGD
201: WMLVGDVPWR MFITSVKRLR VMKTSEANGL AARHQDPKER QRNKPV
001: MITELEMGKG ESELELGLGL SLGGGTAAKI GKSGGGGAWG ERGRLLTAKD FPSVGSKRAA DSASHAGSSP PRSSQVVGWP PIGSHRMNSL VNNQATKSAR
101: EEEEAGKKKV KDDEPKDVTK KVNGKVQVGF IKVNMDGVAI GRKVDLNAHS SYENLAQTLE DMFFRTNPGT VGLTSQFTKP LRLLDGSSEF VLTYEDKEGD
201: WMLVGDVPWR MFINSVKRLR VMKTSEANGL AARNQEPNER QRKQPV
101: EEEEAGKKKV KDDEPKDVTK KVNGKVQVGF IKVNMDGVAI GRKVDLNAHS SYENLAQTLE DMFFRTNPGT VGLTSQFTKP LRLLDGSSEF VLTYEDKEGD
201: WMLVGDVPWR MFINSVKRLR VMKTSEANGL AARNQEPNER QRKQPV
Arabidopsis Description
IAA13Auxin-responsive protein IAA13 [Source:UniProtKB/Swiss-Prot;Acc:Q38831]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.