Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021184.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY64626 | Canola | cytosol | 96.28 | 96.28 |
| CDY43104 | Canola | nucleus | 84.01 | 84.64 |
| AT3G16500.1 | Thale cress | nucleus | 84.01 | 84.01 |
| CDX75884 | Canola | cytosol | 82.9 | 82.29 |
| CDX82399 | Canola | nucleus | 81.41 | 80.51 |
| CDX92077 | Canola | nucleus | 82.16 | 77.54 |
| CDX87863 | Canola | nucleus | 62.45 | 66.14 |
| CDY46538 | Canola | nucleus | 64.31 | 64.07 |
| CDY33844 | Canola | nucleus | 60.22 | 64.03 |
| CDY22876 | Canola | nucleus | 59.85 | 63.64 |
| CDY53439 | Canola | nucleus | 64.31 | 63.37 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 31.23 | 48.28 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 31.23 | 48.28 |
| CDX87072 | Canola | cytosol | 30.86 | 47.43 |
| TraesCS1A01G122600.2 | Wheat | nucleus | 38.66 | 46.22 |
| TraesCS1D01G123500.1 | Wheat | nucleus | 38.29 | 45.37 |
| KRH09948 | Soybean | nucleus | 52.79 | 44.38 |
| GSMUA_Achr3P16300_001 | Banana | endoplasmic reticulum, golgi, mitochondrion, plastid | 36.43 | 42.98 |
| Os01t0190300-01 | Rice | nucleus | 37.92 | 42.86 |
| Solyc03g121060.2.1 | Tomato | nucleus | 45.35 | 42.51 |
| PGSC0003DMT400006709 | Potato | nucleus | 44.61 | 42.4 |
| EES17832 | Sorghum | nucleus | 37.55 | 41.74 |
| Zm00001d010360_P001 | Maize | cytosol, nucleus | 35.32 | 41.67 |
| CDY19790 | Canola | cytosol | 30.11 | 41.54 |
| KRH23388 | Soybean | nucleus | 52.79 | 41.04 |
| TraesCS3B01G127400.1 | Wheat | nucleus | 34.94 | 40.87 |
| TraesCS3D01G110200.1 | Wheat | nucleus | 34.94 | 40.87 |
| Zm00001d039513_P001 | Maize | cytosol, nucleus, plastid | 34.57 | 40.61 |
| GSMUA_Achr5P09310_001 | Banana | endoplasmic reticulum | 35.32 | 40.43 |
| HORVU1Hr1G028170.4 | Barley | cytosol, nucleus, plastid | 36.8 | 40.08 |
| Zm00001d037691_P003 | Maize | cytosol, nucleus | 35.69 | 38.87 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.24 | 38.64 |
| Os02t0228900-01 | Rice | nucleus | 42.75 | 38.33 |
| TraesCS3A01G108400.1 | Wheat | cytosol, nucleus, peroxisome | 35.69 | 38.1 |
| HORVU3Hr1G019750.4 | Barley | cytosol, nucleus, plastid | 34.2 | 37.55 |
| KRH47203 | Soybean | nucleus | 44.24 | 37.54 |
| KRH44271 | Soybean | nucleus | 43.49 | 37.38 |
| CDY51701 | Canola | nucleus | 27.14 | 36.32 |
| OQU84670 | Sorghum | nucleus | 39.03 | 35.96 |
| Zm00001d016277_P002 | Maize | nucleus | 39.03 | 35.12 |
| Os01t0741900-01 | Rice | nucleus | 42.75 | 34.33 |
| CDY59182 | Canola | nucleus | 28.25 | 33.78 |
| CDY53196 | Canola | nucleus | 28.25 | 33.48 |
| CDY46895 | Canola | cytosol | 8.92 | 33.33 |
| CDY38374 | Canola | nucleus | 29.37 | 33.19 |
| CDY19477 | Canola | nucleus | 29.0 | 33.19 |
| CDY17158 | Canola | nucleus | 29.0 | 33.05 |
| TraesCS1B01G356600.1 | Wheat | cytosol | 36.43 | 33.0 |
| GSMUA_Achr7P13680_001 | Banana | nucleus | 44.98 | 32.97 |
| CDY35203 | Canola | nucleus | 29.74 | 32.92 |
| TraesCS3D01G276600.1 | Wheat | cytosol, mitochondrion, nucleus | 40.89 | 32.84 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 53.53 | 32.8 |
| Os05t0523300-01 | Rice | nucleus | 39.78 | 32.72 |
| TraesCS1D01G345400.1 | Wheat | nucleus | 35.69 | 32.54 |
| TraesCS1A01G343300.1 | Wheat | nucleus | 35.32 | 32.31 |
| CDX84693 | Canola | nucleus | 29.0 | 32.23 |
| TraesCS3B01G310500.1 | Wheat | cytosol, mitochondrion, nucleus | 40.89 | 32.07 |
| TraesCS3A01G276500.1 | Wheat | cytosol, mitochondrion, nucleus | 40.52 | 31.96 |
| CDX79522 | Canola | nucleus | 29.0 | 31.71 |
| HORVU3Hr1G070620.5 | Barley | cytosol, mitochondrion, nucleus | 41.26 | 31.44 |
| KXG33336 | Sorghum | nucleus | 42.38 | 31.23 |
| CDX89814 | Canola | nucleus | 27.14 | 31.06 |
| CDY18243 | Canola | nucleus | 26.02 | 30.3 |
| Zm00001d043515_P002 | Maize | cytosol, mitochondrion, nucleus | 40.15 | 30.25 |
| CDY71609 | Canola | nucleus, plastid | 17.47 | 29.94 |
| KXG22376 | Sorghum | nucleus | 38.29 | 29.86 |
| Zm00001d038784_P001 | Maize | nucleus | 39.03 | 29.75 |
| CDX82361 | Canola | cytosol, plastid | 17.1 | 29.3 |
| CDX95843 | Canola | plastid | 16.73 | 29.03 |
| OQU86163 | Sorghum | golgi, plastid | 37.92 | 28.49 |
| CDX92140 | Canola | nucleus, plastid | 16.73 | 28.48 |
| CDY25089 | Canola | plastid | 18.22 | 28.32 |
| CDX67874 | Canola | plastid | 17.47 | 27.17 |
| CDY58757 | Canola | plastid | 17.1 | 26.74 |
| CDY27511 | Canola | cytosol, plastid | 17.1 | 26.44 |
| CDY48005 | Canola | cytosol, plastid | 17.1 | 26.44 |
| CDX89844 | Canola | cytosol, nucleus, plastid | 26.39 | 26.2 |
| CDY11402 | Canola | plastid | 16.73 | 25.42 |
| CDY18205 | Canola | cytosol, nucleus, plastid | 25.28 | 25.09 |
| CDY46058 | Canola | plastid | 14.13 | 22.75 |
| CDX75231 | Canola | nucleus | 17.84 | 20.78 |
| CDX68829 | Canola | nucleus | 16.73 | 19.74 |
| CDX92888 | Canola | nucleus | 29.37 | 19.51 |
| CDY13478 | Canola | nucleus | 17.47 | 19.34 |
| CDX72351 | Canola | nucleus | 17.47 | 19.03 |
Protein Annotations
| MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | GO:A0A078HB13 | UniProt:A0A078HB13 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY34957 | ProteinID:CDY34957 | ProteinID:CDY34957.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00057542001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF2 | SUPFAM:SSF54277 | UniParc:UPI00025439F0 |
Description
BnaA01g27770DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078HB13]
Coordinates
chrLK032344:-:17288..19096
Molecular Weight (calculated)
30285.9 Da
IEP (calculated)
9.695
GRAVY (calculated)
-0.878
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGCPRNREL CPKLLDLIPQ ARQWYHEENN NTDQEKKLEL RLGPPGGYDE DRPATKKNTE TRNNNIKKEA EDKSIFSPSK NHFSPSNRTN LPHISHKRTA
101: PGPVVGWPPV RSFRKNLATT SSSKLVNESS HVGQINKNGD GVKQVEPKRE GMFVKINMDS VPIGRKIDLN AYNSYEQLSF GVDKLFRGLL AAQRDTSGGE
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALRFG CSKQEKMRN
101: PGPVVGWPPV RSFRKNLATT SSSKLVNESS HVGQINKNGD GVKQVEPKRE GMFVKINMDS VPIGRKIDLN AYNSYEQLSF GVDKLFRGLL AAQRDTSGGE
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALRFG CSKQEKMRN
001: MEGCPRNREI GPKLLDLIPQ GRKWYQEDKN NTDQEKKLEL RLGPPGGDEE DHSAIKKKNT EIRNIKKETE DKSFHCFNGN HFSPSNKTTS VPHISQKRTA
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH
Arabidopsis Description
IAA26Auxin-responsive protein IAA26 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.