Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G25890.1 | Thale cress | nucleus | 24.8 | 52.0 |
| CDX87072 | Canola | cytosol | 24.8 | 52.0 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 23.98 | 50.57 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 23.98 | 50.57 |
| GSMUA_Achr3P16300_001 | Banana | endoplasmic reticulum, golgi, mitochondrion, plastid | 31.34 | 50.44 |
| Bra009867.1-P | Field mustard | cytosol | 23.98 | 50.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.42 | 49.35 |
| CDX87863 | Canola | nucleus | 34.06 | 49.21 |
| Bra036557.1-P | Field mustard | nucleus | 23.16 | 48.57 |
| PGSC0003DMT400006709 | Potato | nucleus | 37.33 | 48.41 |
| Bra014303.1-P | Field mustard | nucleus | 35.42 | 48.15 |
| Solyc03g121060.2.1 | Tomato | nucleus | 37.6 | 48.08 |
| CDY22876 | Canola | nucleus | 32.7 | 47.43 |
| CDY46538 | Canola | nucleus | 34.88 | 47.41 |
| CDY53439 | Canola | nucleus | 35.15 | 47.25 |
| Bra018938.1-P | Field mustard | nucleus | 32.15 | 46.64 |
| AT1G51950.1 | Thale cress | nucleus | 33.79 | 46.44 |
| CDY33844 | Canola | nucleus | 31.61 | 45.85 |
| AT3G16500.1 | Thale cress | nucleus | 33.52 | 45.72 |
| GSMUA_Achr5P09310_001 | Banana | endoplasmic reticulum | 29.16 | 45.53 |
| CDY64626 | Canola | cytosol | 33.24 | 45.35 |
| KRH09948 | Soybean | nucleus | 39.51 | 45.31 |
| CDY34957 | Canola | nucleus | 32.97 | 44.98 |
| Bra021184.1-P | Field mustard | nucleus | 32.97 | 44.98 |
| CDY43104 | Canola | nucleus | 32.15 | 44.19 |
| CDY19790 | Canola | cytosol | 22.89 | 43.08 |
| TraesCS1D01G345400.1 | Wheat | nucleus | 34.6 | 43.05 |
| Bra022164.1-P | Field mustard | nucleus | 33.24 | 42.81 |
| CDX92077 | Canola | nucleus | 33.24 | 42.81 |
| TraesCS1B01G356600.1 | Wheat | cytosol | 34.6 | 42.76 |
| TraesCS1A01G343300.1 | Wheat | nucleus | 34.06 | 42.52 |
| CDX75884 | Canola | cytosol | 31.34 | 42.44 |
| Bra001634.1-P | Field mustard | nucleus | 30.79 | 41.54 |
| CDX82399 | Canola | nucleus | 30.79 | 41.54 |
| KRH23388 | Soybean | nucleus | 38.96 | 41.33 |
| KRH47203 | Soybean | nucleus | 35.42 | 41.01 |
| Os05t0523300-01 | Rice | nucleus | 36.24 | 40.67 |
| TraesCS3D01G276600.1 | Wheat | cytosol, mitochondrion, nucleus | 37.06 | 40.6 |
| KRH44271 | Soybean | nucleus | 34.6 | 40.58 |
| TraesCS3B01G310500.1 | Wheat | cytosol, mitochondrion, nucleus | 37.87 | 40.52 |
| Os01t0741900-01 | Rice | nucleus | 36.78 | 40.3 |
| TraesCS3A01G276500.1 | Wheat | cytosol, mitochondrion, nucleus | 37.06 | 39.88 |
| VIT_04s0008g00220.t01 | Wine grape | nucleus | 37.33 | 39.71 |
| HORVU3Hr1G070620.5 | Barley | cytosol, mitochondrion, nucleus | 37.6 | 39.09 |
| Zm00001d043515_P002 | Maize | cytosol, mitochondrion, nucleus | 37.6 | 38.66 |
| KXG33336 | Sorghum | nucleus | 38.15 | 38.36 |
| GSMUA_Achr9P26900_001 | Banana | plastid | 11.72 | 36.13 |
| KXG22376 | Sorghum | nucleus | 33.24 | 35.36 |
| Zm00001d038784_P001 | Maize | nucleus | 33.24 | 34.56 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 40.33 | 33.71 |
| GSMUA_Achr9P26910_001 | Banana | nucleus | 11.99 | 30.34 |
| GSMUA_Achr9P16800_001 | Banana | nucleus | 14.17 | 29.89 |
| GSMUA_Achr7P03120_001 | Banana | nucleus | 19.62 | 29.27 |
| GSMUA_Achr8P29850_001 | Banana | nucleus | 13.62 | 28.41 |
| GSMUA_Achr2P04230_001 | Banana | nucleus | 22.89 | 27.63 |
| GSMUA_Achr11P... | Banana | nucleus | 22.07 | 27.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 22.62 | 26.52 |
| GSMUA_Achr10P... | Banana | nucleus | 22.07 | 26.13 |
| GSMUA_Achr6P29100_001 | Banana | nucleus | 17.17 | 21.28 |
| GSMUA_Achr9P08370_001 | Banana | nucleus | 14.17 | 20.47 |
Protein Annotations
| MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr7G13680_001 | EnsemblPlants:GSMUA_Achr7P13680_001 |
| EnsemblPlants:GSMUA_Achr7T13680_001 | InterPro:IPR000270 | UniProt:M0THA5 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF2 | SUPFAM:SSF54277 | UniParc:UPI000294A4D6 | SEG:seg | : |
Description
Putative Auxin-responsive protein IAA18 [Source:GMGC_GENE;Acc:GSMUA_Achr7G13680_001]
Coordinates
chr7:-:10999070..11002025
Molecular Weight (calculated)
39986.0 Da
IEP (calculated)
8.593
GRAVY (calculated)
-0.686
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKGSKSTGS ANYRKRGESK DEMWWAKSGM EEEFRGGRPQ LFDFITNGRD WSDKGGYGAA EEKNLELRLG LPGGEDWSAV QEKREHPAES AVSPGHIAKI
101: PKSTNMSASS GAKRGCSDAV DSKPEGTLAD KTTFQQQHLQ QQQLGFLQLQ AKGKESLHRT SGSAGLQSLE GKVCGPHAAH ASSTKNTTAT HSTSQSRAAA
201: APVVGWPPIR SFRKNLAGTA KASAESPNRR SEAEKKLEND RKGLFVKINM DGIPIGRKVD LKAYDSYEKL SLAVDELFRG LLMAAQMDLL AATTHSTIET
301: HLISGLLDRS GEYTLVYEDD EGDKMLVGDV PWDMFVSTAK RLRVLKSSDL CASPLSPGEI RRRTNDC
101: PKSTNMSASS GAKRGCSDAV DSKPEGTLAD KTTFQQQHLQ QQQLGFLQLQ AKGKESLHRT SGSAGLQSLE GKVCGPHAAH ASSTKNTTAT HSTSQSRAAA
201: APVVGWPPIR SFRKNLAGTA KASAESPNRR SEAEKKLEND RKGLFVKINM DGIPIGRKVD LKAYDSYEKL SLAVDELFRG LLMAAQMDLL AATTHSTIET
301: HLISGLLDRS GEYTLVYEDD EGDKMLVGDV PWDMFVSTAK RLRVLKSSDL CASPLSPGEI RRRTNDC
001: MEGCPRNREI GPKLLDLIPQ GRKWYQEDKN NTDQEKKLEL RLGPPGGDEE DHSAIKKKNT EIRNIKKETE DKSFHCFNGN HFSPSNKTTS VPHISQKRTA
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH
Arabidopsis Description
IAA26Auxin-responsive protein IAA26 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.