Factsheet for GSMUA_Achr1P20040_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P20000_001
GSMUA_Achr1P20010_001
GSMUA_Achr1P20040_001
GSMUA_Achr2P12630_001
GSMUA_Achr2P19760_001
GSMUA_Achr3P16300_001
GSMUA_Achr4P05200_001
GSMUA_Achr4P21020_001
GSMUA_Achr4P21030_001
GSMUA_Achr4P22520_001
GSMUA_Achr4P22530_001
GSMUA_Achr5P03110_001
GSMUA_Achr5P09310_001
GSMUA_Achr6P07390_001
GSMUA_Achr6P12780_001
GSMUA_Achr6P29070_001
GSMUA_Achr6P36980_001
GSMUA_Achr7P13680_001
GSMUA_Achr7P24330_001
GSMUA_Achr8P20610_001
GSMUA_Achr8P20620_001
GSMUA_Achr8P29850_001
GSMUA_Achr9P08310_001
GSMUA_Achr9P10690_001
GSMUA_Achr9P10700_001
GSMUA_Achr9P16800_001
GSMUA_Achr9P24330_001
GSMUA_Achr9P25550_001
GSMUA_Achr9P26900_001
GSMUA_Achr9P26910_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19850.1	GSMUA_Achr10P...	AT1G04250.1	21734647
AT1G19850.1	GSMUA_Achr4P21020_001	AT1G04250.1	21734647
AT1G19850.1	GSMUA_Achr4P22520_001	AT1G04250.1	21734647
AT1G19850.1	GSMUA_Achr8P20610_001	AT1G04250.1	21734647
AT1G19850.1	GSMUA_Achr9P10700_001	AT1G04250.1	21734647
AT1G19850.1	GSMUA_Achr9P25550_001	AT1G04250.1	21734647
AT1G19850.1	GSMUA_Achr1P20000_001	AT1G19850.1	14729917
AT1G19850.1	GSMUA_Achr1P20010_001	AT1G19850.1	14729917
AT1G19850.1	GSMUA_Achr1P20040_001	AT1G19850.1	14729917
AT1G19850.1	GSMUA_Achr6P36980_001	AT1G19850.1	14729917
AT1G19850.1	GSMUA_Achr1P20000_001	AT1G19850.1	21734647
AT1G19850.1	GSMUA_Achr1P20010_001	AT1G19850.1	21734647
AT1G19850.1	GSMUA_Achr1P20040_001	AT1G19850.1	21734647
AT1G19850.1	GSMUA_Achr6P36980_001	AT1G19850.1	21734647
AT1G19850.1	GSMUA_Achr1P20000_001	AT1G19850.1	22096563
AT1G19850.1	GSMUA_Achr1P20010_001	AT1G19850.1	22096563
AT1G19850.1	GSMUA_Achr1P20040_001	AT1G19850.1	22096563
AT1G19850.1	GSMUA_Achr6P36980_001	AT1G19850.1	22096563
AT1G19850.1	GSMUA_Achr1P20000_001	AT1G19850.1	24485461
AT1G19850.1	GSMUA_Achr1P20010_001	AT1G19850.1	24485461
AT1G19850.1	GSMUA_Achr1P20040_001	AT1G19850.1	24485461
AT1G19850.1	GSMUA_Achr6P36980_001	AT1G19850.1	24485461
AT1G19850.1	GSMUA_Achr10P...	AT1G59750.1	22096563
AT1G19850.1	GSMUA_Achr6P07390_001	AT1G59750.1	22096563
AT1G19850.1	GSMUA_Achr6P12780_001	AT1G59750.1	22096563
AT1G19850.1	GSMUA_Achr6P29070_001	AT1G59750.1	22096563
AT1G19850.1	GSMUA_Achr9P08310_001	AT1G59750.1	22096563
AT1G19850.1	GSMUA_Achr8P29850_001	AT3G17600.1	21734647
AT1G19850.1	GSMUA_Achr9P16800_001	AT3G17600.1	21734647
AT1G19850.1	GSMUA_Achr10P...	AT3G23050.1	21734647
AT1G19850.1	GSMUA_Achr4P21020_001	AT3G23050.1	21734647
AT1G19850.1	GSMUA_Achr4P22520_001	AT3G23050.1	21734647
AT1G19850.1	GSMUA_Achr8P20610_001	AT3G23050.1	21734647
AT1G19850.1	GSMUA_Achr9P10700_001	AT3G23050.1	21734647
AT1G19850.1	GSMUA_Achr9P25550_001	AT3G23050.1	21734647
AT1G19850.1	GSMUA_Achr10P...	AT3G61830.1	22096563
AT1G19850.1	GSMUA_Achr2P19760_001	AT3G61830.1	22096563
AT1G19850.1	GSMUA_Achr7P24330_001	AT3G61830.1	22096563
AT1G19850.1	GSMUA_AchrUn_...	AT3G61830.1	22096563
AT1G19850.1	GSMUA_Achr11P...	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr2P12630_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr4P05200_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr4P21030_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr4P22530_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr5P03110_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr8P20620_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr9P10690_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr9P24330_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr11P...	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr2P12630_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr4P05200_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr4P21030_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr4P22530_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr5P03110_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr8P20620_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr9P10690_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr9P24330_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr11P...	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr2P12630_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr4P05200_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr4P21030_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr4P22530_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr5P03110_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr8P20620_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr9P10690_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr9P24330_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr9P26900_001	AT4G32280.1	21734647
AT1G19850.1	GSMUA_Achr9P26910_001	AT4G32280.1	21734647
AT1G19850.1	GSMUA_Achr3P16300_001	AT5G25890.1	21734647
AT1G19850.1	GSMUA_Achr5P09310_001	AT5G25890.1	21734647
AT1G19850.1	GSMUA_Achr7P13680_001	AT5G25890.1	21734647
AT1G19850.1	GSMUA_AchrUn_...	AT5G25890.1	21734647
AT1G19850.1	GSMUA_Achr3P16300_001	AT5G25890.1	22096563
AT1G19850.1	GSMUA_Achr5P09310_001	AT5G25890.1	22096563
AT1G19850.1	GSMUA_Achr7P13680_001	AT5G25890.1	22096563
AT1G19850.1	GSMUA_AchrUn_...	AT5G25890.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025775.1-P	Field mustard	nucleus	42.58	70.85
GSMUA_Achr6P36980_001	Banana	nucleus	75.58	68.88
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	23.66	61.87
GSMUA_Achr1P20000_001	Banana	nucleus	71.87	57.88
GSMUA_Achr1P20010_001	Banana	plasma membrane, plastid	67.9	50.57
Bra016492.1-P	Field mustard	nucleus	50.51	47.25
CDY62586	Canola	nucleus	50.77	46.93
CDX83741	Canola	nucleus	50.51	46.69
Os04t0664400-01	Rice	nucleus	54.6	46.41
CDY61164	Canola	nucleus	51.02	46.34
EES13038	Sorghum	nucleus	55.75	46.09
VIT_18s0001g13930.t01	Wine grape	nucleus	55.88	45.86
GSMUA_AchrUn_...	Banana	mitochondrion	29.92	45.79
Bra012190.1-P	Field mustard	nucleus	50.51	45.56
CDY01393	Canola	nucleus	50.38	45.55
Zm00001d001945_P002	Maize	nucleus	55.12	45.46
CDY29392	Canola	nucleus	50.64	45.21
Solyc04g081240.2.1	Tomato	nucleus	53.58	45.05
HORVU2Hr1G109650.18	Barley	nucleus	54.99	44.93
TraesCS2D01G491200.2	Wheat	nucleus	54.86	44.92
TraesCS2A01G491000.1	Wheat	nucleus	54.86	44.92
PGSC0003DMT400009660	Potato	nucleus	53.32	44.89
CDY39348	Canola	nucleus	50.38	44.82
TraesCS2B01G519200.2	Wheat	nucleus	54.73	44.82
AT1G19850.1	Thale cress	nucleus	51.41	44.57
Zm00001d026540_P002	Maize	nucleus	54.48	44.42
KRH17404	Soybean	nucleus	52.43	44.09
KRH05923	Soybean	nucleus	52.43	43.94
GSMUA_Achr3P10240_001	Banana	nucleus	32.99	41.61
GSMUA_Achr4P25960_001	Banana	nucleus	41.43	40.45
GSMUA_Achr5P02450_001	Banana	nucleus	42.33	39.98
GSMUA_Achr5P26580_001	Banana	nucleus	41.18	39.9
GSMUA_Achr3P23290_001	Banana	nucleus	41.69	39.76
GSMUA_Achr11P...	Banana	nucleus	41.05	39.63
GSMUA_Achr11P...	Banana	nucleus	41.82	39.45
GSMUA_Achr6P19850_001	Banana	nucleus	42.84	39.18
GSMUA_Achr9P18170_001	Banana	nucleus	40.54	37.12
GSMUA_Achr9P14090_001	Banana	nucleus	42.97	36.92
GSMUA_Achr5P00590_001	Banana	nucleus	42.46	36.52
GSMUA_Achr11P...	Banana	nucleus	42.33	36.25
GSMUA_Achr1P08230_001	Banana	mitochondrion	30.69	36.14
GSMUA_Achr9P08310_001	Banana	vacuole	22.51	36.14
GSMUA_Achr3P05460_001	Banana	nucleus	41.56	33.4
GSMUA_Achr2P19760_001	Banana	nucleus	28.13	32.93
GSMUA_Achr6P07390_001	Banana	nucleus	27.24	32.52
GSMUA_Achr6P01740_001	Banana	nucleus	42.71	32.15
GSMUA_AchrUn_...	Banana	nucleus	26.09	32.13
GSMUA_Achr10P...	Banana	nucleus	27.62	32.05
GSMUA_Achr10P...	Banana	nucleus	27.24	31.93
GSMUA_Achr7P24330_001	Banana	nucleus	27.11	31.83
GSMUA_Achr6P12780_001	Banana	nucleus	28.13	31.61
GSMUA_Achr5P05010_001	Banana	nucleus	35.04	31.46
GSMUA_Achr8P23850_001	Banana	nucleus	42.71	31.3
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	27.62	30.99
GSMUA_Achr6P08090_001	Banana	nucleus	31.59	29.98
GSMUA_Achr10P...	Banana	nucleus	30.31	28.76
GSMUA_Achr6P16450_001	Banana	nucleus	31.07	27.84
GSMUA_AchrUn_...	Banana	nucleus	30.95	27.38
GSMUA_Achr8P13620_001	Banana	nucleus	14.58	23.55

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr1G20040_001
EnsemblPlants:GSMUA_Achr1P20040_001	EnsemblPlants:GSMUA_Achr1T20040_001	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	UniProt:M0S1G2
InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745
PANTHER:PTHR31384	PANTHER:PTHR31384:SF10	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000296A5F3
SEG:seg	:	:	:	:	:

Description

Auxin response factor 11 [Source:GMGC_GENE;Acc:GSMUA_Achr1G20040_001]

Coordinates

chr1:-:15046886..15058151

Molecular Weight (calculated)

87438.3 Da

IEP (calculated)

5.988

GRAVY (calculated)

-0.414

Length

782 amino acids

Sequence
(BLAST)

001: MSSVQANVRA AGLNSAAALL DEMKLLGEVP SKPSARKVLN SELWHACAGP LVSLPQPGSL VYYFPQGHSE QVTASTRKIA NSQIPAYTDL PSQLMCQVHN
101: VTLHADKETD EIYAQMTLQP VTSENDVFPI PDLGHTRCKH PTEFFCKILT ASDTSTHGGF SVPRRAAEKL FPQLDYSMQP PNQELIVRDL HDNLWTFRHI
201: YRGQPKRHLL TTGWSLFVGA KRLKAGDSVL FIRDEKSQLL LGVRRANRKQ TALTSSVLST DSMHIGVLAA AAHAAANRSP FTVYYNPRAC PSEFIIPLTK
301: YHKAAYTQVS IGMRFGMMFE TEESSKRRYM GTIVGISDYD PVRWPNSRWR NLQVEWDEHG YGERPDRVSL WEIETPESLF AFPNVTSSLK RQCLPGYVGD
401: AILVSKDSDN VKVWLLSSKM HSTKISLTNQ KNLLRLLNKP CNPNRDGLLA HHQSIYASIL QNVRNNFVSG TQVKSQVSDR EEARPAEHEQ NFQDHNTRGE
501: NGINLQGMKE QSDHKLVQQQ NDPSRTQSPG LHAAQSSDMC NLNYLLPHQD CSHPILDNDD WMTQHSCLQS FMDISSMANP NSFEPTETFQ LSCISDSGTP
601: QRITTDIQEF LGTQLNSLDD ELLVQGILSS ESNNQGETIS NLRFDPSNES MDMGHVPGVA IDGLSPIGSS SKLSFLLISD AIYVEQVQKV GSVGRSIDVT
701: RFSNYCELRS AVACMFGLEG QLDDPRGSEW KLVYVDYEND VLLVGDDPWE EFISCVKCIR ILSPSEVQQM SQEGMQLMDG FA

Best Arabidopsis Sequence Match ( AT1G19850.1 )
(BLAST)

001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS

Arabidopsis Description

ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.