Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P05200_001 | Banana | mitochondrion | 53.57 | 72.0 |
| GSMUA_Achr4P22530_001 | Banana | nucleus | 76.19 | 70.72 |
| KRH34375 | Soybean | cytosol, nucleus | 48.81 | 67.21 |
| GSMUA_Achr4P21030_001 | Banana | nucleus | 78.57 | 66.67 |
| GSMUA_Achr9P10690_001 | Banana | cytosol, mitochondrion, nucleus | 53.57 | 66.18 |
| GSMUA_Achr9P24330_001 | Banana | nucleus | 63.69 | 62.57 |
| GSMUA_Achr2P12630_001 | Banana | nucleus | 75.0 | 62.07 |
| GSMUA_Achr8P20620_001 | Banana | nucleus | 68.45 | 61.17 |
| GSMUA_Achr11P... | Banana | nucleus | 59.52 | 57.47 |
| VIT_07s0141g00270.t01 | Wine grape | nucleus | 63.1 | 56.99 |
| PGSC0003DMT400051896 | Potato | plastid | 51.19 | 56.21 |
| PGSC0003DMT400042074 | Potato | cytosol, nucleus, plastid | 63.1 | 55.79 |
| Solyc06g053840.2.1 | Tomato | nucleus | 63.1 | 55.79 |
| Solyc06g084070.2.1 | Tomato | nucleus, plastid | 51.79 | 55.77 |
| CDX92972 | Canola | nucleus | 54.76 | 53.8 |
| Bra001899.1-P | Field mustard | nucleus | 54.76 | 53.8 |
| Solyc09g083280.2.1 | Tomato | nucleus | 62.5 | 53.57 |
| PGSC0003DMT400015655 | Potato | nucleus | 61.9 | 53.33 |
| AT5G43700.1 | Thale cress | cytosol, extracellular, nucleus | 58.93 | 53.23 |
| CDX94876 | Canola | nucleus | 54.17 | 53.22 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 60.12 | 52.88 |
| KRH69048 | Soybean | nucleus | 60.12 | 52.6 |
| Bra027504.1-P | Field mustard | nucleus | 59.52 | 52.36 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 59.52 | 52.36 |
| CDY10692 | Canola | nucleus | 53.57 | 52.33 |
| Bra033890.1-P | Field mustard | nucleus | 53.57 | 52.33 |
| VIT_14s0030g02310.t01 | Wine grape | nucleus | 61.9 | 52.26 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 55.95 | 52.22 |
| CDY35493 | Canola | nucleus | 52.98 | 52.05 |
| Bra023771.1-P | Field mustard | nucleus | 52.98 | 52.05 |
| CDY40837 | Canola | nucleus | 52.98 | 52.05 |
| PGSC0003DMT400049677 | Potato | nucleus | 56.55 | 51.91 |
| VIT_05s0020g04680.t01 | Wine grape | nucleus | 51.79 | 51.79 |
| AT4G14560.1 | Thale cress | nucleus | 51.79 | 51.79 |
| CDY10346 | Canola | nucleus | 52.98 | 51.74 |
| CDY10069 | Canola | nucleus | 56.55 | 51.63 |
| KRH71338 | Soybean | nucleus | 61.9 | 51.49 |
| Solyc09g065850.2.1 | Tomato | nucleus | 56.55 | 51.35 |
| Solyc04g054280.1.1 | Tomato | nucleus | 50.6 | 51.2 |
| Bra032521.1-P | Field mustard | nucleus | 54.76 | 51.11 |
| Bra015297.1-P | Field mustard | cytosol, nucleus, plastid | 56.55 | 51.08 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 56.55 | 51.08 |
| KRG92430 | Soybean | nucleus | 58.93 | 51.03 |
| PGSC0003DMT400013662 | Potato | cytosol | 56.55 | 50.0 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 54.76 | 49.46 |
| Solyc06g008580.2.1 | Tomato | nucleus | 55.36 | 48.95 |
| CDY36883 | Canola | nucleus | 50.0 | 48.84 |
| CDY53735 | Canola | nucleus | 49.4 | 48.26 |
| KRH67288 | Soybean | nucleus | 58.33 | 47.57 |
| PGSC0003DMT400034978 | Potato | cytosol, mitochondrion, nucleus | 46.43 | 47.56 |
| KRG95613 | Soybean | nucleus | 57.74 | 47.55 |
| Bra039732.1-P | Field mustard | nucleus | 47.02 | 46.2 |
| KRH32098 | Soybean | nucleus | 46.43 | 44.83 |
| GSMUA_Achr2P15340_001 | Banana | nucleus | 53.57 | 36.73 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 54.17 | 36.69 |
| GSMUA_Achr10P... | Banana | nucleus | 51.79 | 36.1 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 51.79 | 35.8 |
| GSMUA_Achr9P02960_001 | Banana | nucleus | 44.05 | 35.75 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 51.79 | 35.66 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 50.0 | 34.85 |
| GSMUA_Achr2P09210_001 | Banana | nucleus | 50.6 | 34.27 |
| GSMUA_Achr10P... | Banana | nucleus | 56.55 | 34.17 |
| AT3G23030.2 | Thale cress | vacuole | 52.98 | 34.1 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.05 | 33.79 |
| GSMUA_Achr9P06290_001 | Banana | nucleus | 54.76 | 33.58 |
| AT1G04240.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 57.74 | 33.56 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 49.4 | 32.81 |
| GSMUA_Achr10P... | Banana | nucleus | 54.17 | 32.73 |
| GSMUA_Achr6P26730_001 | Banana | nucleus | 54.17 | 32.62 |
| GSMUA_Achr7P10930_001 | Banana | nucleus | 51.79 | 32.58 |
| GSMUA_Achr10P... | Banana | nucleus | 55.95 | 32.19 |
| GSMUA_Achr3P03400_001 | Banana | nucleus | 54.76 | 29.49 |
| GSMUA_Achr4P08960_001 | Banana | nucleus | 45.83 | 28.31 |
| GSMUA_Achr7P13250_001 | Banana | nucleus | 42.26 | 23.91 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr5G03110_001 | EnsemblPlants:GSMUA_Achr5P03110_001 |
| EnsemblPlants:GSMUA_Achr5T03110_001 | InterPro:IPR000270 | UniProt:M0SV90 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF8 | SUPFAM:SSF54277 | UniParc:UPI0002948373 | : | : |
Description
Auxin-responsive protein IAA4 [Source:GMGC_GENE;Acc:GSMUA_Achr5G03110_001]
Coordinates
chr5:-:2122209..2122972
Molecular Weight (calculated)
18527.1 Da
IEP (calculated)
8.047
GRAVY (calculated)
-0.551
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAEASYVKD TELRLGLPGT HAPVATRGSK RALPEDDEKS HGKSKARVVG WPPIQSYRKN SFRARKAEAE VAGSYVKVSM DGAPYLRKID LRVYRGYKEL
101: REALEDMFGC FSLGEASGAE GCTGSEHAMA YEDKDGDLML VGDVPWEMFI SSCKRLRIMK GSEARGLG
101: REALEDMFGC FSLGEASGAE GCTGSEHAMA YEDKDGDLML VGDVPWEMFI SSCKRLRIMK GSEARGLG
001: MEKVDVYDEL VNLKATELRL GLPGTEETVS CGKSNKRVLP EATEKEIEST GKTETASPPK AQIVGWPPVR SYRKNNVQTK KSESEGQGNY VKVSMDGAPY
101: LRKIDLTMYK QYPELMKSLE NMFKFSVGEY FEREGYKGSD FVPTYEDKDG DWMLVGDVPW EMFVSSCKRL RIMKGSEVKG LGCGGL
101: LRKIDLTMYK QYPELMKSLE NMFKFSVGEY FEREGYKGSD FVPTYEDKDG DWMLVGDVPW EMFVSSCKRL RIMKGSEVKG LGCGGL
Arabidopsis Description
IAA4Auxin-responsive protein IAA4 [Source:UniProtKB/Swiss-Prot;Acc:P33077]
SUBAcon: [extracellular,nucleus,cytosol]
SUBAcon: [extracellular,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.