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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001598.1-P
Bra001670.1-P
Bra001900.1-P
Bra002327.1-P
Bra003518.1-P
Bra007720.1-P
Bra009867.1-P
Bra012190.1-P
Bra013748.1-P
Bra014303.1-P
Bra014378.1-P
Bra015298.1-P
Bra016492.1-P
Bra016517.1-P
Bra018938.1-P
Bra019255.1-P
Bra020125.1-P
Bra021117.1-P
Bra021257.1-P
Bra022224.1-P
Bra022283.1-P
Bra024406.1-P
Bra025720.1-P
Bra025775.1-P
Bra026755.1-P
Bra027232.1-P
Bra027504.1-P
Bra028110.1-P
Bra030560.1-P
Bra032520.1-P
Bra033886.1-P
Bra036557.1-P
Bra037824.1-P
Bra039732.1-P
Bra040122.1-P
Bra040398.1-P
Bra040476.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G14560.1 Bra015298.1-P AT1G04250.1 21734647
AT4G14560.1 Bra030560.1-P AT1G04250.1 21734647
AT4G14560.1 Bra032520.1-P AT1G04250.1 21734647
AT4G14560.1 Bra015298.1-P AT1G04250.1 9342315
AT4G14560.1 Bra030560.1-P AT1G04250.1 9342315
AT4G14560.1 Bra032520.1-P AT1G04250.1 9342315
AT4G14560.1 Bra026755.1-P AT1G15580.1 21734647
AT4G14560.1 Bra016517.1-P AT1G19220.1 9342315
AT4G14560.1 Bra025720.1-P AT1G19220.1 9342315
AT4G14560.1 Bra012190.1-P AT1G19850.1 14729917
AT4G14560.1 Bra016492.1-P AT1G19850.1 14729917
AT4G14560.1 Bra025775.1-P AT1G19850.1 14729917
AT4G14560.1 Bra012190.1-P AT1G19850.1 21734647
AT4G14560.1 Bra016492.1-P AT1G19850.1 21734647
AT4G14560.1 Bra025775.1-P AT1G19850.1 21734647
AT4G14560.1 Bra012190.1-P AT1G19850.1 9342315
AT4G14560.1 Bra016492.1-P AT1G19850.1 9342315
AT4G14560.1 Bra025775.1-P AT1G19850.1 9342315
AT4G14560.1 Bra014303.1-P AT1G51950.1 21798944
AT4G14560.1 Bra018938.1-P AT1G51950.1 21798944
AT4G14560.1 Bra040476.1-P AT2G46990.1 9342315
AT4G14560.1 Bra040122.1-P AT3G04730.1 21734647
AT4G14560.1 Bra040398.1-P AT3G04730.1 21734647
AT4G14560.1 Bra040122.1-P AT3G04730.1 21798944
AT4G14560.1 Bra040398.1-P AT3G04730.1 21798944
AT4G14560.1 Bra040122.1-P AT3G04730.1 9342315
AT4G14560.1 Bra040398.1-P AT3G04730.1 9342315
AT4G14560.1 Bra001598.1-P AT3G15540.1 21734647
AT4G14560.1 Bra021117.1-P AT3G15540.1 21734647
AT4G14560.1 Bra027232.1-P AT3G15540.1 21734647
AT4G14560.1 Bra001598.1-P AT3G15540.1 9342315
AT4G14560.1 Bra021117.1-P AT3G15540.1 9342315
AT4G14560.1 Bra027232.1-P AT3G15540.1 9342315
AT4G14560.1 Bra001670.1-P AT3G17600.1 21734647
AT4G14560.1 Bra021257.1-P AT3G17600.1 21734647
AT4G14560.1 Bra022224.1-P AT3G17600.1 21734647
AT4G14560.1 Bra022283.1-P AT3G18140.1 21798944
AT4G14560.1 Bra001900.1-P AT3G23050.1 21734647
AT4G14560.1 Bra033886.1-P AT3G23050.1 21734647
AT4G14560.1 Bra003518.1-P AT3G62980.1 15546359
AT4G14560.1 Bra007720.1-P AT3G62980.1 15546359
AT4G14560.1 Bra014378.1-P AT3G62980.1 15546359
AT4G14560.1 Bra039732.1-P AT4G14560.1 14729917
AT4G14560.1 Bra039732.1-P AT4G14560.1 21734647
AT4G14560.1 Bra039732.1-P AT4G14560.1 21798944
AT4G14560.1 Bra039732.1-P AT4G14560.1 9342315
AT4G14560.1 Bra013748.1-P AT4G23980.1 21734647
AT4G14560.1 Bra019255.1-P AT4G23980.1 21734647
AT4G14560.1 Bra002327.1-P AT5G20730.1 14729917
AT4G14560.1 Bra020125.1-P AT5G20730.1 14729917
AT4G14560.1 Bra002327.1-P AT5G20730.1 9342315
AT4G14560.1 Bra020125.1-P AT5G20730.1 9342315
AT4G14560.1 Bra009867.1-P AT5G25890.1 21798944
AT4G14560.1 Bra036557.1-P AT5G25890.1 21798944
AT4G14560.1 Bra028110.1-P AT5G37020.1 14729917
AT4G14560.1 Bra027504.1-P AT5G43700.1 21734647
AT4G14560.1 Bra027504.1-P AT5G43700.1 9342315
AT4G14560.1 Bra024406.1-P AT5G65670.1 9342315
AT4G14560.1 Bra037824.1-P AT5G65670.1 9342315
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY36883 Canola nucleus 95.91 95.35
CDY53735 Canola nucleus 94.74 94.19
AT4G14560.1 Thale cress nucleus 78.36 79.76
Bra033890.1-P Field mustard nucleus 76.61 76.16
Bra001899.1-P Field mustard nucleus 75.44 75.44
Bra023771.1-P Field mustard nucleus 75.44 75.44
KRH34375 Soybean cytosol, nucleus 47.37 66.39
Bra032521.1-P Field mustard nucleus 60.23 57.22
PGSC0003DMT400042074 Potato cytosol, nucleus, plastid 63.16 56.84
VIT_05s0020g04680.t01 Wine grape nucleus 55.56 56.55
Solyc06g053840.2.1 Tomato nucleus 62.57 56.32
Solyc09g083280.2.1 Tomato nucleus 63.16 55.1
PGSC0003DMT400015655 Potato nucleus 62.57 54.87
Bra015297.1-P Field mustard cytosol, nucleus, plastid 59.65 54.84
Bra027504.1-P Field mustard nucleus 60.82 54.45
KRH69048 Soybean nucleus 60.82 54.17
GSMUA_Achr9P10690_001 Banana cytosol, mitochondrion, nucleus 42.69 53.68
PGSC0003DMT400034978 Potato cytosol, mitochondrion, nucleus 51.46 53.66
KRG92430 Soybean nucleus 60.23 53.09
Solyc04g054280.1.1 Tomato nucleus 47.37 48.8
GSMUA_Achr4P05200_001 Banana mitochondrion 35.09 48.0
GSMUA_Achr9P24330_001 Banana nucleus 47.37 47.37
GSMUA_Achr5P03110_001 Banana nucleus 46.2 47.02
GSMUA_Achr4P22530_001 Banana nucleus 48.54 45.86
Bra026755.1-P Field mustard nucleus 41.52 45.51
GSMUA_Achr11P... Banana nucleus 45.61 44.83
GSMUA_Achr4P21030_001 Banana nucleus 49.71 42.93
GSMUA_Achr8P20620_001 Banana nucleus 46.2 42.02
TraesCS5D01G449400.1 Wheat nucleus 43.86 41.44
EER90734 Sorghum cytosol, nucleus, plastid 45.03 41.4
GSMUA_Achr2P12630_001 Banana nucleus 49.12 41.38
TraesCS5B01G446100.1 Wheat cytosol, mitochondrion, nucleus 42.69 41.24
EER98076 Sorghum cytosol, mitochondrion, nucleus 47.95 41.21
Zm00001d013071_P001 Maize nucleus 43.27 40.88
TraesCS5A01G058700.1 Wheat cytosol 50.88 40.65
TraesCS5B01G058800.1 Wheat cytosol 50.88 40.65
TraesCS5D01G069200.1 Wheat cytosol 50.88 40.65
Os12t0601400-01 Rice nucleus 46.2 40.1
Os03t0797800-01 Rice nucleus 45.61 39.59
Zm00001d018973_P001 Maize nucleus 45.61 38.61
Bra032520.1-P Field mustard nucleus 50.88 38.33
Bra040122.1-P Field mustard nucleus 50.29 38.22
Bra001598.1-P Field mustard nucleus 43.27 38.14
TraesCS5D01G388200.1 Wheat nucleus 47.95 38.14
Bra021117.1-P Field mustard cytosol, nucleus, plastid 43.86 38.07
TraesCS5A01G378200.1 Wheat nucleus 46.78 37.74
Bra015298.1-P Field mustard nucleus 49.12 37.5
TraesCS5B01G381800.1 Wheat nucleus 46.2 37.26
Bra027232.1-P Field mustard nucleus 42.11 37.11
Bra039855.1-P Field mustard nucleus 50.29 36.91
Bra040398.1-P Field mustard nucleus 49.71 36.8
EER93778 Sorghum cytosol, nucleus, plastid 48.54 36.73
Bra030560.1-P Field mustard nucleus 49.12 36.68
Bra018993.1-P Field mustard nucleus 43.27 36.45
Bra037824.1-P Field mustard plastid 41.52 36.41
Zm00001d033319_P001 Maize nucleus 47.95 36.28
Zm00001d030993_P001 Maize nucleus 42.11 36.18
Zm00001d013707_P001 Maize nucleus 47.37 36.16
Zm00001d041418_P001 Maize nucleus 48.54 36.09
Os03t0633800-01 Rice nucleus 47.37 35.84
EES16315 Sorghum cytosol 49.71 34.84
Bra033886.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 49.12 34.71
Os07t0182400-01 Rice plastid 44.44 34.7
Bra001900.1-P Field mustard cytosol, nucleus, plastid 47.95 34.6
HORVU5Hr1G106350.2 Barley plastid 43.27 32.89
Bra011082.1-P Field mustard nucleus 52.05 30.69
Bra024406.1-P Field mustard nucleus 41.52 30.47
HORVU5Hr1G014290.1 Barley mitochondrion 45.03 30.08
Bra030219.1-P Field mustard nucleus 46.78 30.08
Bra031850.1-P Field mustard mitochondrion 46.78 27.4
HORVU5Hr1G093640.1 Barley mitochondrion 49.12 26.75
Zm00001d034463_P001 Maize extracellular, golgi 42.69 22.81
Protein Annotations
Gene3D:3.10.20.90MapMan:35.1InterPro:AUX/IAA_domInterPro:AUX_IAAEnsemblPlantsGene:Bra039732EnsemblPlants:Bra039732.1
EnsemblPlants:Bra039732.1-PGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351
GO:GO:0006355GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009719GO:GO:0009733GO:GO:0009734GO:GO:0009987GO:GO:0042802GO:GO:0043565
GO:GO:0044212InterPro:IPR000270UniProt:M4FF60InterPro:PB1_domPFAM:PF02309PFscan:PS51745
PANTHER:PTHR31734PANTHER:PTHR31734:SF11SUPFAM:SSF54277UniParc:UPI00025459EE::
Description
AT4G14560 (E=4e-071) IAA1, AXR5 | IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE); protein binding / transcription factor
Coordinates
chrA08:+:6318438..6319036
Molecular Weight (calculated)
19800.5 Da
IEP (calculated)
6.281
GRAVY (calculated)
-0.742
Length
171 amino acids
Sequence
(BLAST)
001: MAYEEVINEL NLKDTELRLG LPGTDEQAEV SCVKSNKRQF HQSNDEHNLK EEYPSPPAKT QIIGWPPVRS NRKNNKSVSY VKVSMDGAPY LRKVDLKMYK
101: NYHEFLKALE NMFKFTIGEY SEREGYKGSG FVPTYEDKDG DWMLVGDVPW DMFSLSCQKL RIMKPSEALA F
Best Arabidopsis Sequence Match ( AT3G23030.2 )
(BLAST)
001: MGGLKLRVPL LSPCLFLAFH ASDNTSLSSF NPNFDAPLYI SLSPFLQNSS TSSPRTRTRR RRTRQEEQST QENTQEGNTK IDIDPKAMAY EKVNELNLKD
101: TELCLGLPGR TEKIKEEQEV SCVKSNNKRL FEETRDEEES TPPTKTQIVG WPPVRSSRKN NNSVSYVKVS MDGAPYLRKI DLKTYKNYPE LLKALENMFK
201: VMIGEYCERE GYKGSGFVPT YEDKDGDWML VGDVPWDMFS SSCKRLRIMK GSDAPALDSS L
Arabidopsis Description
IAA2Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ54]
SUBAcon: [vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.