Factsheet for Bra018993.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002327.1-P
Bra011082.1-P
Bra012190.1-P
Bra013748.1-P
Bra015298.1-P
Bra016492.1-P
Bra018993.1-P
Bra019255.1-P
Bra020125.1-P
Bra025775.1-P
Bra026166.1-P
Bra028110.1-P
Bra030560.1-P
Bra032520.1-P
Bra039732.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52830.1	Bra015298.1-P	AT1G04250.1	21734647
AT1G52830.1	Bra030560.1-P	AT1G04250.1	21734647
AT1G52830.1	Bra032520.1-P	AT1G04250.1	21734647
AT1G52830.1	Bra026166.1-P	AT1G15050.1	21734647
AT1G52830.1	Bra012190.1-P	AT1G19850.1	14729917
AT1G52830.1	Bra016492.1-P	AT1G19850.1	14729917
AT1G52830.1	Bra025775.1-P	AT1G19850.1	14729917
AT1G52830.1	Bra012190.1-P	AT1G19850.1	22096563
AT1G52830.1	Bra016492.1-P	AT1G19850.1	22096563
AT1G52830.1	Bra025775.1-P	AT1G19850.1	22096563
AT1G52830.1	Bra018993.1-P	AT1G52830.1	14729917
AT1G52830.1	Bra039732.1-P	AT4G14560.1	21798944
AT1G52830.1	Bra013748.1-P	AT4G23980.1	22096563
AT1G52830.1	Bra019255.1-P	AT4G23980.1	22096563
AT1G52830.1	Bra011082.1-P	AT4G29080.1	21798944
AT1G52830.1	Bra002327.1-P	AT5G20730.1	14729917
AT1G52830.1	Bra020125.1-P	AT5G20730.1	14729917
AT1G52830.1	Bra028110.1-P	AT5G37020.1	14729917

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68807	Canola	nucleus	96.55	100.0
CDY53800	Canola	nucleus	82.27	88.83
AT1G52830.1	Thale cress	nucleus	72.91	78.31
Bra001598.1-P	Field mustard	nucleus	58.62	61.34
KRH47514	Soybean	nucleus	54.68	59.36
KRH09813	Soybean	nucleus	54.68	59.36
Bra027232.1-P	Field mustard	nucleus	56.65	59.28
Bra021117.1-P	Field mustard	cytosol, nucleus, plastid	56.65	58.38
KRH44390	Soybean	nucleus	55.17	57.44
KRH23504	Soybean	nucleus	53.2	57.14
Solyc03g120380.2.1	Tomato	nucleus	51.23	54.17
PGSC0003DMT400006800	Potato	mitochondrion	51.72	53.85
VIT_09s0002g05150.t01	Wine grape	cytosol, nucleus, plastid	50.74	53.65
Bra026755.1-P	Field mustard	nucleus	40.89	53.21
PGSC0003DMT400042572	Potato	nucleus	28.08	52.78
Bra023771.1-P	Field mustard	nucleus	42.36	50.29
Bra001899.1-P	Field mustard	nucleus	41.87	49.71
Bra033890.1-P	Field mustard	nucleus	41.87	49.42
Bra032521.1-P	Field mustard	nucleus	38.42	43.33
Bra039732.1-P	Field mustard	nucleus	36.45	43.27
Bra027504.1-P	Field mustard	nucleus	40.39	42.93
Bra015297.1-P	Field mustard	cytosol, nucleus, plastid	37.93	41.4
Bra040122.1-P	Field mustard	nucleus	41.38	37.33
Bra032520.1-P	Field mustard	nucleus	40.89	36.56
Bra040398.1-P	Field mustard	nucleus	41.38	36.36
Bra037824.1-P	Field mustard	plastid	34.48	35.9
Bra030560.1-P	Field mustard	nucleus	40.39	35.81
Bra039855.1-P	Field mustard	nucleus	40.89	35.62
Bra033886.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	42.36	35.54
Bra015298.1-P	Field mustard	nucleus	38.92	35.27
Bra001900.1-P	Field mustard	cytosol, nucleus, plastid	40.89	35.02
Bra024406.1-P	Field mustard	nucleus	35.47	30.9
Bra030219.1-P	Field mustard	nucleus	39.9	30.45
Bra011082.1-P	Field mustard	nucleus	43.35	30.34
Bra031850.1-P	Field mustard	mitochondrion	40.39	28.08

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	EnsemblPlantsGene:Bra018993	EnsemblPlants:Bra018993.1
EnsemblPlants:Bra018993.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009704	GO:GO:0009719	GO:GO:0009733	GO:GO:0009734	GO:GO:0009791	GO:GO:0009987
InterPro:IPR000270	UniProt:M4DR50	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734
PANTHER:PTHR31734:SF87	SUPFAM:SSF54277	UniParc:UPI000253E88B	:	:	:

Description

AT1G52830 (E=7e-076) IAA6, SHY1 | IAA6 (INDOLE-3-ACETIC ACID 6); transcription factor

Coordinates

chrA06:+:847333..848370

Molecular Weight (calculated)

22541.1 Da

IEP (calculated)

5.459

GRAVY (calculated)

-0.304

Length

203 amino acids

Sequence
(BLAST)

001: MAKEGLGLEI TELRLGLPVD NNGERLVSGS KKTKRVFSEM MISSSLDTDG ANSVVSSVDI VTGEVEDDSV PKDKSQAVGW PPVCSYRTKK NNNKESSKAI
101: GYVKVSMCGV PYLRKVDLGT SKGYTHLATV LEKLFDCLGL GVALKEGEKF EYVIIYEDKD RDWMLVGDVP WEMFKESCMR LRIVKRSDAT GFGLQRDLSL
201: QLE

Best Arabidopsis Sequence Match ( AT1G52830.1 )
(BLAST)

001: MAKEGLALEI TELRLGLPGD NYSEISVCGS SKKKKRVLSD MMTSSALDTE NENSVVSSVE DESLPVVKSQ AVGWPPVCSY RRKKNNEEAS KAIGYVKVSM
101: DGVPYMRKID LGSSNSYINL VTVLENLFGC LGIGVAKEGK KCEYIIIYED KDRDWMLVGD VPWQMFKESC KRLRIVKRSD ATGFGLQQD

Arabidopsis Description

IAA6Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A178W781]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.