Factsheet for Bra002327.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001598.1-P
Bra001900.1-P
Bra002327.1-P
Bra011082.1-P
Bra012910.1-P
Bra014303.1-P
Bra015298.1-P
Bra018938.1-P
Bra018993.1-P
Bra020125.1-P
Bra021117.1-P
Bra027232.1-P
Bra029990.1-P
Bra030560.1-P
Bra032520.1-P
Bra033886.1-P
Bra036048.1-P
Bra039732.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20730.1	Bra015298.1-P	AT1G04250.1	21734647
AT5G20730.1	Bra030560.1-P	AT1G04250.1	21734647
AT5G20730.1	Bra032520.1-P	AT1G04250.1	21734647
AT5G20730.1	Bra014303.1-P	AT1G51950.1	18505759
AT5G20730.1	Bra018938.1-P	AT1G51950.1	18505759
AT5G20730.1	Bra018993.1-P	AT1G52830.1	14729917
AT5G20730.1	Bra001598.1-P	AT3G15540.1	14729917
AT5G20730.1	Bra021117.1-P	AT3G15540.1	14729917
AT5G20730.1	Bra027232.1-P	AT3G15540.1	14729917
AT5G20730.1	Bra001598.1-P	AT3G15540.1	21734647
AT5G20730.1	Bra021117.1-P	AT3G15540.1	21734647
AT5G20730.1	Bra027232.1-P	AT3G15540.1	21734647
AT5G20730.1	Bra001900.1-P	AT3G23050.1	21734647
AT5G20730.1	Bra033886.1-P	AT3G23050.1	21734647
AT5G20730.1	Bra012910.1-P	AT3G50060.1	17675404
AT5G20730.1	Bra029990.1-P	AT3G50060.1	17675404
AT5G20730.1	Bra036048.1-P	AT3G50060.1	17675404
AT5G20730.1	Bra039732.1-P	AT4G14560.1	14729917
AT5G20730.1	Bra039732.1-P	AT4G14560.1	21734647
AT5G20730.1	Bra039732.1-P	AT4G14560.1	9342315
AT5G20730.1	Bra011082.1-P	AT4G29080.1	21734647
AT5G20730.1	Bra002327.1-P	AT5G20730.1	14729917
AT5G20730.1	Bra020125.1-P	AT5G20730.1	14729917

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92437	Canola	nucleus	70.26	97.21
Bra020125.1-P	Field mustard	nucleus	66.09	86.45
AT5G20730.1	Thale cress	nucleus	69.7	86.09
CDY16560	Canola	nucleus	58.1	80.23
KRH12587	Soybean	nucleus	47.88	61.41
KRH37536	Soybean	nucleus	47.95	61.33
VIT_11s0016g00640.t01	Wine grape	nucleus	48.92	60.95
Bra016517.1-P	Field mustard	nucleus	42.11	60.0
Bra025720.1-P	Field mustard	nucleus	43.5	59.68
KRH19355	Soybean	nucleus	46.42	59.06
KRH02575	Soybean	nucleus	46.42	58.8
Bra025775.1-P	Field mustard	nucleus	19.11	58.51
Solyc07g042260.2.1	Tomato	nucleus	45.8	57.96
GSMUA_Achr9P18170_001	Banana	nucleus	34.33	57.85
GSMUA_Achr3P10240_001	Banana	nucleus	24.88	57.74
PGSC0003DMT400006151	Potato	nucleus	45.93	57.13
TraesCS7D01G161900.1	Wheat	nucleus	36.34	49.11
TraesCS7A01G160800.1	Wheat	nucleus	36.34	49.06
Os06t0196700-02	Rice	nucleus	35.79	48.82
KXG19536	Sorghum	nucleus	35.37	48.34
Zm00001d045026_P002	Maize	nucleus	35.09	47.96
TraesCS7B01G065800.2	Wheat	plastid	36.0	47.92
HORVU7Hr1G033820.5	Barley	nucleus	34.54	46.62
Bra004125.1-P	Field mustard	nucleus	23.77	43.85
Bra010776.1-P	Field mustard	nucleus	25.16	43.51
Bra016492.1-P	Field mustard	nucleus	24.39	41.99
Bra028110.1-P	Field mustard	nucleus	24.18	41.23
Bra012190.1-P	Field mustard	nucleus	24.11	40.02
Bra014419.1-P	Field mustard	nucleus	15.22	39.46
Bra004530.1-P	Field mustard	nucleus	15.15	37.33
Bra013748.1-P	Field mustard	nucleus	15.57	37.21
Bra019255.1-P	Field mustard	nucleus	15.77	36.44
Bra035427.1-P	Field mustard	nucleus	16.33	35.34
Bra034234.1-P	Field mustard	nucleus	12.51	33.27
Bra002479.1-P	Field mustard	nucleus	16.54	31.4
Bra010048.1-P	Field mustard	nucleus	18.49	31.26
Bra027944.1-P	Field mustard	nucleus	11.74	30.78
Bra018124.1-P	Field mustard	nucleus	11.33	29.37
Bra035910.1-P	Field mustard	nucleus	17.93	29.05
Bra017362.1-P	Field mustard	nucleus	10.08	26.85
Bra007632.1-P	Field mustard	nucleus	15.15	20.66

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra002327	EnsemblPlants:Bra002327.1	EnsemblPlants:Bra002327.1-P	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
UniProt:M4CDP6	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF21	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277
UniParc:UPI0002544A48	SEG:seg	:	:	:	:

Description

AT5G20730 (E=5e-264) NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); DNA binding / transcription activator/ transcription factor/ transcription regulator

Coordinates

chrA10:+:10294029..10300012

Molecular Weight (calculated)

158550.0 Da

IEP (calculated)

7.125

GRAVY (calculated)

-0.605

Length

1439 amino acids

Sequence
(BLAST)

0001: MKAPSSNGVS PNPMEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLQ NVTLNADPET EEVYAQMTLQ
0101: PVNKYDRDAL LASDMGLKIN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIFRGQPKRH LLTTGWSVFV
0201: STKRLFAGDS VLFVRDGKGQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI
0301: FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT PFYICPPPFF RPRFAGQPGM PDDGTDMESA LKRAMPWLDN
0401: GLEMKDPSST IFPGLSLVQW MSMQQQNGGQ VPSSAGFFPS MVSPTAAMHN SLGGADDQSK LVSFQTPPGG ISSSNLQFNK PNLQGAMSQL PQPPTTLSQQ
0501: QQLQQLLHSY LNHQQSQPQQ HKGQLLLGIR RANRQQPALS SSVISSDSMH IGVLAAAAHA NANNSPFTIF YNPRAAPAEF VVPLAKYTKA MYAQVSLGMR
0601: FRMIFETEEC GVRRYMGTVT GISDLDPVRW KNSQWRNLQI GWDESAAGDR PSRVSVWDIE PVLTPFYICP PPFFRPRFAG QPGMPDDGTD MESALKRAMP
0701: WLDNGLEMKD PSSTIFPGLS LVQWMSMQQQ NGGQVPSSAG FFPSMVSPTA AMHNSLGGAD DQSKLVSFQT PPGGISSSNL QFNKPNLQGA MSQLPQPPTT
0801: LSQQQQLQQL LHSSLNHQQS QPQQQPQSHQ QQQQQPQSLH QQQQQQSLLL QQQQQQQQSL QQHHQQQLQQ HHQQPLQQQT QQQQLQQQQQ QLRAQQLQSH
0901: THPQPQQSPP HPQPQSHPQQ LQPHKLQQFQ LPQNQLYNGQ PAVQQHQSQQ ASMHHLQSQV VSGSIASSVI APPSSSLNQS FQQQQQQSTQ LQHTHRHIGA
1001: STSQSSVIET SKSSSNLMSI PPQDTQFSRQ MEQQQPPGSS SLPSQLLHQQ LQSQQFPQLP SPSQVQQFPS SCTNTGLPSL QPPQTLVSRP QDKQNPPVGG
1101: GAKAYSGITD GGDAPSSSTS PSTNNCQISS STFLNRSQSG PAILIPDPAV DVSGSLVQDL YSKSDMRLKH ELVSQQKPKA SLTDHQLEAS ASGTSYGLDG
1201: GENNRQQNFL SPNFGLDGDS RNSLFGGAAN VENGFVPDTL LSRGYDSQKD LQNMLSNYGG VPNVIGTEMS TSAVRTQSFG IPNVPAISND IAVNDAGVLG
1301: GGLWPTQTQR MRTYTKVQKR GSVGRSIDVN RYRGYDELRH DLARMFGIEG QLEDPLTSDW KLVYVDHEND ILLVGDDPWE EFVNCVQSIK ILSSAEVQQM
1401: SLDGNFAGLP ATNQACSGGD NGNGWRGQYD DNSATSFNR

Best Arabidopsis Sequence Match ( AT5G20730.2 )
(BLAST)

0001: MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ
0101: PVNKYDRDAL LASDMGLKLN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIYRGQPKRH LLTTGWSVFV
0201: STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI
0301: FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT PFYICPPPFF RPRFSGQPGM PDDETDMESA LKRAMPWLDN
0401: SLEMKDPSST IFPGLSLVQW MNMQQQNGQL PSAAAQPGFF PSMLSPTAAL HNNLGGTDDP SKLLSFQTPH GGISSSNLQF NKQNQQAPMS QLPQPPTTLS
0501: QQQQLQQLLH SSLNHQQQQS QSQQQQQQQQ LLQQQQQLQS QQHSNNNQSQ SQQQQQLLQQ QQQQQLQQQH QQPLQQQTQQ QQLRTQPLQS HSHPQPQQLQ
0601: QHKLQQLQVP QNQLYNGQQA AQQHQSQQAS THHLQPQLVS GSMASSVITP PSSSLNQSFQ QQQQQSKQLQ QAHHHLGAST SQSSVIETSK SSSNLMSAPP
0701: QETQFSRQVE QQQPPGLNGQ NQQTLLQQKA HQAQAQQIFQ QSLLEQPHIQ FQLLQRLQQQ QQQQFLSPQS QLPHHQLQSQ QLQQLPTLSQ GHQFPSSCTN
0801: NGLSTLQPPQ MLVSRPQEKQ NPPVGGGVKA YSGITDGGDA PSSSTSPSTN NCQISSSGFL NRSQSGPAIL IPDAAIDMSG NLVQDLYSKS DMRLKQELVG
0901: QQKSKASLTD HQLEASASGT SYGLDGGENN RQQNFLAPTF GLDGDSRNSL LGGANVDNGF VPDTLLSRGY DSQKDLQNML SNYGGVTNDI GTEMSTSAVR
1001: TQSFGVPNVP AISNDLAVND AGVLGGGLWP AQTQRMRTYT KVQKRGSVGR SIDVNRYRGY DELRHDLARM FGIEGQLEDP QTSDWKLVYV DHENDILLVG
1101: DDPWEEFVNC VQSIKILSSA EVQQMSLDGN FAGVPVTNQA CSGGDSGNAW RGHYDDNSAT SFNR

Arabidopsis Description

NPH4Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related [Source:TAIR;Acc:AT5G20730]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.