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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001598.1-P
Bra002479.1-P
Bra002729.1-P
Bra007632.1-P
Bra014303.1-P
Bra014419.1-P
Bra015298.1-P
Bra017362.1-P
Bra018124.1-P
Bra018938.1-P
Bra018993.1-P
Bra021117.1-P
Bra024406.1-P
Bra027232.1-P
Bra027944.1-P
Bra030560.1-P
Bra032520.1-P
Bra034234.1-P
Bra037824.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G61830.1 Bra015298.1-P AT1G04250.1 21734647
AT3G61830.1 Bra030560.1-P AT1G04250.1 21734647
AT3G61830.1 Bra032520.1-P AT1G04250.1 21734647
AT3G61830.1 Bra017362.1-P AT1G34310.1 22096563
AT3G61830.1 Bra018124.1-P AT1G34310.1 22096563
AT3G61830.1 Bra027944.1-P AT1G34310.1 22096563
AT3G61830.1 Bra034234.1-P AT1G34310.1 22096563
AT3G61830.1 Bra014303.1-P AT1G51950.1 22096563
AT3G61830.1 Bra018938.1-P AT1G51950.1 22096563
AT3G61830.1 Bra018993.1-P AT1G52830.1 22096563
AT3G61830.1 Bra001598.1-P AT3G15540.1 22096563
AT3G61830.1 Bra021117.1-P AT3G15540.1 22096563
AT3G61830.1 Bra027232.1-P AT3G15540.1 22096563
AT3G61830.1 Bra007632.1-P AT3G61830.1 22096563
AT3G61830.1 Bra014419.1-P AT3G61830.1 22096563
AT3G61830.1 Bra002729.1-P AT5G57420.1 21734647
AT3G61830.1 Bra002479.1-P AT5G60450.1 22096563
AT3G61830.1 Bra024406.1-P AT5G65670.1 22096563
AT3G61830.1 Bra037824.1-P AT5G65670.1 22096563
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra014419.1-P Field mustard nucleus 45.88 87.21
AT3G61830.1 Thale cress nucleus 45.02 78.9
Bra004530.1-P Field mustard nucleus 39.15 70.72
Bra013748.1-P Field mustard nucleus 30.52 53.49
VIT_15s0046g00290.t01 Wine grape nucleus 34.88 52.42
KRH68924 Soybean nucleus 32.51 51.81
Bra019255.1-P Field mustard nucleus 30.24 51.2
PGSC0003DMT400000345 Potato nucleus 32.99 50.8
Solyc01g096070.2.1 Tomato nucleus 32.99 50.51
GSMUA_Achr10P... Banana nucleus 31.85 50.37
GSMUA_Achr2P19760_001 Banana nucleus 31.56 49.85
KRH06451 Soybean nucleus 33.65 49.58
GSMUA_AchrUn_... Banana nucleus 29.76 49.45
KRH47893 Soybean nucleus 33.18 48.88
GSMUA_Achr7P24330_001 Banana nucleus 30.81 48.8
Bra035427.1-P Field mustard nucleus 28.53 45.26
Bra034234.1-P Field mustard nucleus 21.42 41.77
Os01t0236300-01 Rice nucleus 27.58 41.63
Bra025775.1-P Field mustard nucleus 18.29 41.06
EES02172 Sorghum nucleus 26.07 39.97
Bra027944.1-P Field mustard nucleus 20.57 39.53
Zm00001d039267_P005 Maize nucleus 24.93 38.01
TraesCS3D01G166700.1 Wheat nucleus 27.11 37.73
TraesCS3B01G190100.1 Wheat nucleus 27.11 37.73
TraesCS3A01G159200.1 Wheat nucleus 27.11 37.68
Bra018124.1-P Field mustard nucleus 19.62 37.3
Bra017362.1-P Field mustard nucleus 18.58 36.3
HORVU3Hr1G032230.6 Barley nucleus, plastid 27.01 35.62
Bra010048.1-P Field mustard nucleus 28.34 35.14
Bra035910.1-P Field mustard nucleus 27.68 32.88
Bra002479.1-P Field mustard nucleus 21.04 29.29
Bra004125.1-P Field mustard nucleus 21.61 29.23
Bra010776.1-P Field mustard nucleus 21.04 26.68
Bra016492.1-P Field mustard nucleus 21.04 26.55
Bra028110.1-P Field mustard nucleus 21.23 26.54
Bra012190.1-P Field mustard nucleus 21.33 25.95
Bra025720.1-P Field mustard nucleus 21.23 21.35
Bra016517.1-P Field mustard nucleus 20.28 21.19
Bra020125.1-P Field mustard nucleus 20.85 20.0
Bra002327.1-P Field mustard nucleus 20.66 15.15
Protein Annotations
MapMan:15.5.1.5MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90ProteinID:AFD01315
ProteinID:AFD01315.1InterPro:AUX/IAA_domInterPro:Auxin_respInterPro:B3_DNA-bdEnsemblPlantsGene:Bra007632EnsemblPlants:Bra007632.1
EnsemblPlants:Bra007632.1-PInterPro:DNA-bd_pseudobarrel_sfInterPro:DUF688GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0007154GO:GO:0007165GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009719GO:GO:0009725GO:GO:0009734GO:GO:0009987
InterPro:IPR000270InterPro:IPR003340InterPro:IPR003851InterPro:IPR015300EMBL:JN979481UniProt:M4CTT8
InterPro:PB1_domPFAM:PD007478PFAM:PF02309PFAM:PF02362PFAM:PF02701PFAM:PF05097
PFAM:PF06507ScanProsite:PS01361PFscan:PS50863PFscan:PS50884PFscan:PS51745PANTHER:PTHR31384
PANTHER:PTHR31384:SF17SMART:SM01019SUPFAM:SSF101936SUPFAM:SSF54277UniParc:UPI0002542A3EInterPro:Znf_Dof
SEG:seg:::::
Description
AT3G61830 (E=2e-187) ARF18 | ARF18 (AUXIN RESPONSE FACTOR 18); transcription factor
Coordinates
chrA09:+:30156200..30164167
Molecular Weight (calculated)
118833.0 Da
IEP (calculated)
8.155
GRAVY (calculated)
-0.608
Length
1055 amino acids
Sequence
(BLAST)
0001: MANVDGDDSR SSFPSSYQDQ LYTELWKACA GPLVEVPLVG ERVFYFPQGH MEQLVASTNQ GIESEKIPDF KLPPKILCQV LSVMLKAEHD TDEVYAQITL
0101: KPEEDQSEPT SLDPPIVEPT KQMFHSFVKI LTASDTSTHG GFSVLRKHAT ECLPALDMTQ AIPTQELVTR DLHGFEWRFK HIFRGQPRRH LLTTGWSTFV
0201: SSKRLVAGDA FVFLRGENGD LRVGVRRLAR HQNTMPASVI SSQSMHLGVL ATASHAVNTQ TMFLVFYKPR ISQFIVSVNK YMEAMKHGFS LGTRFRMRFE
0301: GEESPERIFT GTIVGIGDLS SQWPASTWRS LQVQWDEPTT VQRPDKVSPW EIEPFLPSSP ASTPSQQSQP KSKRSKPIES SSLSPGQASF LGVQAEPPPP
0401: PASSCYRLFG FDLTSNPPAP IPPDKQPMDT SEAAKCQDPI TPSSVNEPKK QQTSRTRTKV QMQGIAVGRA VDLTLLKSYD ELIKELEEMF EIQGQLLPRD
0501: KWIVVFTDDE GDMMLAGDDP WNEFCKMAKK IFIYSSDENL LPSSSWNDHK HQQERCLLWV LKMMKREEEE MIITSKLQLV LAAKSRKQQY TSSPVINHHV
0601: SLSLLSSPDD LSHSRASVPF AWEEEPGKPK QHTLLRVPPK YPKRLDLPPR LLLPREGTET PLACDHPRYL AALKRWFRLR KDRADDDNDV VGQCSLVVSS
0701: ENENDKKITR TRSRLHCLYD VARCYLWFMD ATKWTQGFQE MINVKPMDQM ISNTNNNTSQ QQQPTFITTT TRPNATAANG GSGGNNNNTA ATMETRKARP
0801: QEKVNCPRCN PTNTKFCYYN NYSLTQPRYF CKGCRRYWTE GGSLRNVPVG GSSRKNKRSS TPLPSHSNPK LPDLNPPILF SSQIPNKSSK DLNLLSFPVM
0901: QDHHHGMSQF LHMPKIENNN TSSSIYASSS PVSALELLRS NGVSSRGMNT FLPGQMMDSN SVIYSSLGFP TMVDYKQSNN NLSFSIDHHQ GIGNNTINSN
1001: QRTEDNNHTD DMNGASRILF PFSDMKELSS TTQDKSHGNN TYWSGMFTNT GGSSW
Best Arabidopsis Sequence Match ( AT3G61830.1 )
(BLAST)
001: MASVEGDDDF GSSSSRSYQD QLYTELWKVC AGPLVEVPRA QERVFYFPQG HMEQLVASTN QGINSEEIPV FDLPPKILCR VLDVTLKAEH ETDEVYAQIT
101: LQPEEDQSEP TSLDPPIVGP TKQEFHSFVK ILTASDTSTH GGFSVLRKHA TECLPSLDMT QATPTQELVT RDLHGFEWRF KHIFRGQPRR HLLTTGWSTF
201: VSSKRLVAGD AFVFLRGENG DLRVGVRRLA RHQSTMPTSV ISSQSMHLGV LATASHAVRT TTIFVVFYKP RISQFIVGVN KYMEAIKHGF SLGTRFRMRF
301: EGEESPERIF TGTIVGSGDL SSQWPASKWR SLQVQWDEPT TVQRPDKVSP WEIEPFLATS PISTPAQQPQ SKCKRSRPIE PSVKTPAPPS FLYSLPQSQD
401: SINASLKLFQ DPSLERISGG YSSNNSFKPE TPPPPTNCSY RLFGFDLTSN SPAPIPQDKQ PMDTCGAAKC QEPITPTSMS EQKKQQTSRS RTKVQMQGIA
501: VGRAVDLTLL KSYDELIDEL EEMFEIQGQL LARDKWIVVF TDDEGDMMLA GDDPWNEFCK MAKKIFIYSS DEVKKMTTKL KISSSLENEE YGNESFENRS
601: RG
Arabidopsis Description
ARF18Auxin response factor 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5W9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.