Factsheet for VIT_15s0046g00290.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g01740.t01
VIT_05s0020g04690.t01
VIT_06s0004g03130.t01
VIT_09s0002g03410.t01
VIT_09s0002g05150.t01
VIT_11s0052g00870.t01
VIT_15s0046g00290.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61830.1	VIT_05s0020g04690.t01	AT1G04250.1	21734647
AT3G61830.1	VIT_02s0025g01740.t01	AT1G34310.1	22096563
AT3G61830.1	VIT_09s0002g03410.t01	AT1G51950.1	22096563
AT3G61830.1	VIT_09s0002g05150.t01	AT1G52830.1	22096563
AT3G61830.1	VIT_09s0002g05150.t01	AT3G15540.1	22096563
AT3G61830.1	VIT_15s0046g00290.t01	AT3G61830.1	22096563
AT3G61830.1	VIT_11s0052g00870.t01	AT5G57420.1	21734647
AT3G61830.1	VIT_06s0004g03130.t01	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000345	Potato	nucleus	68.09	69.78
Solyc01g096070.2.1	Tomato	nucleus	67.38	68.65
VIT_02s0025g01740.t01	Wine grape	nucleus	65.67	67.6
Bra004530.1-P	Field mustard	nucleus	54.99	66.1
CDX95705	Canola	nucleus	51.28	66.06
CDX80025	Canola	nucleus	54.84	65.92
Bra014419.1-P	Field mustard	nucleus	51.14	64.68
KRH68924	Soybean	nucleus	60.97	64.65
KRH06451	Soybean	nucleus	64.1	62.85
AT2G46530.3	Thale cress	endoplasmic reticulum, vacuole	55.27	62.38
KRH47893	Soybean	nucleus	63.25	62.01
AT3G61830.1	Thale cress	nucleus	52.56	61.3
GSMUA_Achr10P...	Banana	nucleus	56.27	59.22
GSMUA_Achr2P19760_001	Banana	nucleus	56.27	59.13
GSMUA_AchrUn_...	Banana	nucleus	51.71	57.17
GSMUA_Achr7P24330_001	Banana	nucleus	53.99	56.91
VIT_18s0089g00910.t01	Wine grape	nucleus	49.43	53.47
VIT_12s0035g01800.t01	Wine grape	nucleus	50.71	52.51
Os01t0236300-01	Rice	nucleus	46.44	46.64
EES02172	Sorghum	nucleus	45.3	46.22
Zm00001d039267_P005	Maize	nucleus	42.31	42.92
TraesCS3A01G159200.1	Wheat	nucleus	45.87	42.42
TraesCS3D01G166700.1	Wheat	nucleus	45.58	42.22
TraesCS3B01G190100.1	Wheat	nucleus	45.58	42.22
VIT_01s0244g00150.t01	Wine grape	nucleus	45.44	41.48
VIT_17s0000g00320.t01	Wine grape	nucleus	50.0	40.72
HORVU3Hr1G032230.6	Barley	nucleus, plastid	45.16	39.62
VIT_07s0104g01230.t01	Wine grape	nucleus	36.89	37.21
Bra007632.1-P	Field mustard	nucleus	52.42	34.88
VIT_06s0004g03130.t01	Wine grape	nucleus	35.33	31.08
VIT_10s0003g04100.t01	Wine grape	nucleus	36.18	27.97
VIT_12s0028g01170.t01	Wine grape	nucleus	35.33	26.75
VIT_18s0001g13930.t01	Wine grape	nucleus	34.05	25.08
VIT_04s0079g00200.t01	Wine grape	nucleus	24.22	24.05
VIT_11s0065g00310.t01	Wine grape	nucleus	36.61	23.05
VIT_11s0016g00640.t01	Wine grape	nucleus	35.47	21.56

Protein Annotations

EntrezGene:100265555	wikigene:100265555	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:CCB62549	ProteinID:CCB62549.1	InterPro:DNA-bd_pseudobarrel_sf
UniProt:F6I6F3	EMBL:FN596755	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	EntrezGene:LOC100265555	wikigene:LOC100265555	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF17
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	TIGR:TC52772	UniParc:UPI000210AB70	ArrayExpress:VIT_15s0046g00290
EnsemblPlantsGene:VIT_15s0046g00290	EnsemblPlants:VIT_15s0046g00290.t01	unigene:Vvi.5670	RefSeq:XP_002264072	RefSeq:XP_002264072.2	SEG:seg

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:F6I6F3]

Coordinates

chr15:-:17300361..17304595

Molecular Weight (calculated)

77942.2 Da

IEP (calculated)

6.825

GRAVY (calculated)

-0.453

Length

702 amino acids

Sequence
(BLAST)

001: MAHGNNIRGG LEPGLESDHL FTELWRACAG PLVDVPKPHE RVFYFPQGHM EQLQASTNQG VDQRIPLFNL PSKILCRVVH TRLLAEQETD EVYAQITLQP
101: EADQTEPKSP DSCPDEAPKQ TVHSFCKILT ASDTSTHGGF SVLRKHANEC LPPLDMSQAT PTQELVARDL HGYEWRFKHI FRGQPRRHLL TTGWSTFVTS
201: KRLVAGDAFV FLRGDNGELR VGVRRLARQQ SPMPSSVISS QSMHLGVLAT ASHAVTTQTL FVVYYKPRTS QFIISLNKYL EAVNYGFAVG MRFKMRFEGE
301: DSPERRFTGT IVGIGDISPQ WSNSKWRSLK IQWDEPATIQ RPERVSSWDI EPFVASASLN LTQPPVKIKR PRPLDLPVAE NTSSSVPSPF WYAGSSPSHE
401: LTQLGGVTEV QSSESQVHWP PKPKEINGNV IHNSNCGSSI GRPEGIWSSS PSVNVSLNLF QDLTEDSKTV STRSILSGYN TSLSSRPNNG LISDQVEKGK
501: RIEASIGCRL FGIDLTNNSK ATALLEMSCP SITSSSVKGP ISAVVSEADR IQNLDVSKSS NEQKQVVPEA SQKETQGRQS CTPSSRTRTK KVQMQGVAVG
601: RAVDLTALEG YDELISELEK MFEIKGELCP RNKWEVVFTD DEGDMMLVGD DPWQEFCKMV RKIFIYSSEE VKKMSPRCKL STSSLDGEGT VISLDSELRT
701: EP

Best Arabidopsis Sequence Match ( AT3G61830.1 )
(BLAST)

001: MASVEGDDDF GSSSSRSYQD QLYTELWKVC AGPLVEVPRA QERVFYFPQG HMEQLVASTN QGINSEEIPV FDLPPKILCR VLDVTLKAEH ETDEVYAQIT
101: LQPEEDQSEP TSLDPPIVGP TKQEFHSFVK ILTASDTSTH GGFSVLRKHA TECLPSLDMT QATPTQELVT RDLHGFEWRF KHIFRGQPRR HLLTTGWSTF
201: VSSKRLVAGD AFVFLRGENG DLRVGVRRLA RHQSTMPTSV ISSQSMHLGV LATASHAVRT TTIFVVFYKP RISQFIVGVN KYMEAIKHGF SLGTRFRMRF
301: EGEESPERIF TGTIVGSGDL SSQWPASKWR SLQVQWDEPT TVQRPDKVSP WEIEPFLATS PISTPAQQPQ SKCKRSRPIE PSVKTPAPPS FLYSLPQSQD
401: SINASLKLFQ DPSLERISGG YSSNNSFKPE TPPPPTNCSY RLFGFDLTSN SPAPIPQDKQ PMDTCGAAKC QEPITPTSMS EQKKQQTSRS RTKVQMQGIA
501: VGRAVDLTLL KSYDELIDEL EEMFEIQGQL LARDKWIVVF TDDEGDMMLA GDDPWNEFCK MAKKIFIYSS DEVKKMTTKL KISSSLENEE YGNESFENRS
601: RG

Arabidopsis Description

ARF18Auxin response factor 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5W9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.