Factsheet for HORVU3Hr1G032230.6

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G021630.1
HORVU1Hr1G017770.6
HORVU1Hr1G028170.4
HORVU1Hr1G041770.1
HORVU1Hr1G086070.6
HORVU2Hr1G076920.3
HORVU2Hr1G089660.8
HORVU2Hr1G089670.1
HORVU2Hr1G109650.18
HORVU2Hr1G112440.1
HORVU3Hr1G019750.4
HORVU3Hr1G031460.1
HORVU3Hr1G032230.6
HORVU3Hr1G062160.2
HORVU3Hr1G070620.5
HORVU3Hr1G081710.1
HORVU3Hr1G088810.1
HORVU3Hr1G096410.4
HORVU3Hr1G096510.3
HORVU3Hr1G097200.10
HORVU4Hr1G078490.1
HORVU5Hr1G014290.1
HORVU5Hr1G014300.4
HORVU5Hr1G024100.1
HORVU5Hr1G093580.2
HORVU5Hr1G093640.1
HORVU5Hr1G094220.1
HORVU5Hr1G106350.2
HORVU6Hr1G058890.2
HORVU6Hr1G088140.2
HORVU7Hr1G021880.1
HORVU7Hr1G026970.2
HORVU7Hr1G033820.5
HORVU7Hr1G101270.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G34310.1	HORVU2Hr1G109650.18	AT1G19850.1	22096563
AT1G34310.1	HORVU3Hr1G032230.6	AT1G34310.1	22096563
AT1G34310.1	HORVU2Hr1G076920.3	AT1G59750.1	22096563
AT1G34310.1	HORVU1Hr1G017770.6	AT3G17600.1	21734647
AT1G34310.1	HORVU3Hr1G032230.6	AT4G23980.1	22096563
AT1G34310.1	HORVU3Hr1G096410.4	AT5G62000.1	21734647
AT1G34310.1	HORVU3Hr1G096510.3	AT5G62000.1	21734647
AT1G34310.1	HORVU3Hr1G097200.10	AT5G62000.1	21734647
AT1G34390.1	HORVU3Hr1G032230.6	AT1G34310.1	21734647
AT1G34390.1	HORVU1Hr1G017770.6	AT2G46990.1	21734647
AT1G34390.1	HORVU5Hr1G014300.4	AT3G04730.1	21734647
AT1G34390.1	HORVU5Hr1G093580.2	AT3G04730.1	21734647
AT1G34390.1	HORVU5Hr1G094220.1	AT3G04730.1	21734647
AT1G34390.1	HORVU5Hr1G014300.4	AT3G23050.1	21734647
AT1G34390.1	HORVU5Hr1G093580.2	AT3G23050.1	21734647
AT1G34390.1	HORVU5Hr1G094220.1	AT3G23050.1	21734647
AT1G34390.1	HORVU1Hr1G028170.4	AT5G25890.1	21734647
AT1G34390.1	HORVU3Hr1G019750.4	AT5G25890.1	21734647
AT1G34390.1	HORVU3Hr1G070620.5	AT5G25890.1	21734647
AT1G35240.1	HORVU5Hr1G014300.4	AT1G04250.1	21734647
AT1G35240.1	HORVU5Hr1G093580.2	AT1G04250.1	21734647
AT1G35240.1	HORVU5Hr1G094220.1	AT1G04250.1	21734647
AT1G35240.1	HORVU7Hr1G033820.5	AT5G20730.1	21734647
AT3G61830.1	HORVU5Hr1G014300.4	AT1G04250.1	21734647
AT3G61830.1	HORVU5Hr1G093580.2	AT1G04250.1	21734647
AT3G61830.1	HORVU5Hr1G094220.1	AT1G04250.1	21734647
AT3G61830.1	HORVU3Hr1G032230.6	AT1G34310.1	22096563
AT3G61830.1	HORVU1Hr1G028170.4	AT1G51950.1	22096563
AT3G61830.1	HORVU3Hr1G019750.4	AT1G51950.1	22096563
AT3G61830.1	HORVU3Hr1G070620.5	AT1G51950.1	22096563
AT3G61830.1	HORVU3Hr1G032230.6	AT3G61830.1	22096563
AT3G61830.1	HORVU2Hr1G112440.1	AT5G57420.1	21734647
AT4G23980.1	HORVU2Hr1G109650.18	AT1G19850.1	22096563
AT4G23980.1	HORVU3Hr1G032230.6	AT1G35240.1	21734647
AT4G23980.1	HORVU2Hr1G076920.3	AT1G59750.1	22096563
AT4G23980.1	HORVU1Hr1G041770.1	AT2G28350.1	22096563
AT4G23980.1	HORVU2Hr1G089660.8	AT2G28350.1	22096563
AT4G23980.1	HORVU2Hr1G089670.1	AT2G28350.1	22096563
AT4G23980.1	HORVU3Hr1G081710.1	AT2G28350.1	22096563
AT4G23980.1	HORVU4Hr1G078490.1	AT2G28350.1	22096563
AT4G23980.1	HORVU5Hr1G024100.1	AT2G28350.1	22096563
AT4G23980.1	HORVU6Hr1G058890.2	AT2G28350.1	22096563
AT4G23980.1	HORVU7Hr1G021880.1	AT2G28350.1	22096563
AT4G23980.1	HORVU7Hr1G101270.1	AT2G28350.1	22096563
AT4G23980.1	HORVU1Hr1G028170.4	AT3G16500.1	21734647
AT4G23980.1	HORVU3Hr1G019750.4	AT3G16500.1	21734647
AT4G23980.1	HORVU3Hr1G070620.5	AT3G16500.1	21734647
AT4G23980.1	HORVU3Hr1G032230.6	AT3G61830.1	22096563
AT4G23980.1	HORVU1Hr1G017770.6	AT3G62100.1	21734647
AT4G23980.1	HORVU3Hr1G032230.6	AT4G23980.1	22096563
AT4G23980.1	HORVU0Hr1G021630.1	AT4G29080.1	21734647
AT4G23980.1	HORVU1Hr1G086070.6	AT4G29080.1	21734647
AT4G23980.1	HORVU3Hr1G031460.1	AT4G29080.1	21734647
AT4G23980.1	HORVU3Hr1G062160.2	AT4G29080.1	21734647
AT4G23980.1	HORVU3Hr1G088810.1	AT4G29080.1	21734647
AT4G23980.1	HORVU6Hr1G088140.2	AT4G32280.1	21734647
AT4G23980.1	HORVU7Hr1G026970.2	AT4G32280.1	21734647
AT4G23980.1	HORVU1Hr1G028170.4	AT5G25890.1	21734647
AT4G23980.1	HORVU3Hr1G019750.4	AT5G25890.1	21734647
AT4G23980.1	HORVU3Hr1G070620.5	AT5G25890.1	21734647
AT4G23980.1	HORVU1Hr1G028170.4	AT5G25890.1	22096563
AT4G23980.1	HORVU3Hr1G019750.4	AT5G25890.1	22096563
AT4G23980.1	HORVU3Hr1G070620.5	AT5G25890.1	22096563
AT4G23980.1	HORVU5Hr1G014290.1	AT5G43700.1	21734647
AT4G23980.1	HORVU5Hr1G093640.1	AT5G43700.1	21734647
AT4G23980.1	HORVU5Hr1G106350.2	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G190100.1	Wheat	nucleus	89.5	94.46
TraesCS3A01G159200.1	Wheat	nucleus	89.38	94.2
TraesCS3D01G166700.1	Wheat	nucleus	89.12	94.06
Os01t0236300-01	Rice	nucleus	64.75	74.11
EES02172	Sorghum	nucleus	61.0	70.93
Zm00001d039267_P005	Maize	nucleus	57.75	66.76
Bra014419.1-P	Field mustard	nucleus	35.25	50.81
Bra004530.1-P	Field mustard	nucleus	36.5	50.0
CDX80025	Canola	nucleus	36.38	49.83
CDX95705	Canola	nucleus	33.38	48.99
AT2G46530.3	Thale cress	endoplasmic reticulum, vacuole	37.25	47.91
AT3G61830.1	Thale cress	nucleus	35.25	46.84
VIT_02s0025g01740.t01	Wine grape	nucleus	39.88	46.77
GSMUA_Achr10P...	Banana	nucleus	38.75	46.48
CDY47607	Canola	nucleus	34.62	45.86
Bra013748.1-P	Field mustard	nucleus	34.38	45.68
VIT_15s0046g00290.t01	Wine grape	nucleus	39.62	45.16
KRH00001	Soybean	nucleus	37.25	44.88
GSMUA_Achr2P19760_001	Banana	nucleus	37.25	44.61
KRH49135	Soybean	nucleus	36.88	44.43
AT4G23980.1	Thale cress	nucleus	35.25	44.2
CDY03502	Canola	nucleus	33.12	44.17
KRH68924	Soybean	nucleus	36.5	44.11
Solyc08g082630.2.1	Tomato	nucleus	35.38	43.94
CDY50434	Canola	nucleus	34.25	43.84
CDY10978	Canola	nucleus	34.25	43.84
PGSC0003DMT400031965	Potato	nucleus	35.88	43.82
KRH75716	Soybean	nucleus	37.88	43.79
KRH65922	Soybean	nucleus	37.75	43.7
Bra019255.1-P	Field mustard	nucleus	34.0	43.66
PGSC0003DMT400000345	Potato	nucleus	37.25	43.5
Solyc01g096070.2.1	Tomato	nucleus	37.25	43.25
Solyc08g008380.2.1	Tomato	nucleus	35.5	41.58
HORVU2Hr1G076920.3	Barley	nucleus	34.38	41.17
KRH06451	Soybean	nucleus	36.5	40.78
KRH47893	Soybean	nucleus	36.25	40.5
AT1G35240.1	Thale cress	nucleus	28.88	39.02
AT1G34310.1	Thale cress	nucleus	28.88	38.95
AT1G34410.1	Thale cress	nucleus	29.5	38.94
AT1G35540.1	Thale cress	nucleus	29.38	38.84
AT1G34390.1	Thale cress	nucleus	29.0	38.8
CDX94748	Canola	endoplasmic reticulum, vacuole	17.75	38.38
CDY53570	Canola	nucleus	23.88	38.12
Bra034234.1-P	Field mustard	nucleus	25.75	38.08
CDY67714	Canola	nucleus	25.25	38.04
AT1G35520.1	Thale cress	nucleus	28.0	37.77
CDY48583	Canola	nucleus	25.75	37.66
CDY21993	Canola	nucleus	25.62	37.61
CDY69758	Canola	nucleus	19.5	37.5
Bra027944.1-P	Field mustard	nucleus	25.12	36.61
CDY41720	Canola	nucleus	25.12	36.55
AT1G34170.3	Thale cress	nucleus	24.88	36.45
CDY49005	Canola	nucleus	25.25	36.27
CDX94777	Canola	nucleus	24.75	35.55
CDY36940	Canola	nucleus	24.0	34.66
CDY54111	Canola	nucleus	24.5	34.57
Bra018124.1-P	Field mustard	nucleus	23.88	34.41
CDY24168	Canola	nucleus	24.12	34.28
Bra017362.1-P	Field mustard	nucleus	22.75	33.7
CDY55738	Canola	nucleus	22.5	33.33
HORVU3Hr1G097200.10	Barley	nucleus	33.0	31.24
HORVU3Hr1G096410.4	Barley	nucleus, plastid	31.25	31.09
HORVU3Hr1G096510.3	Barley	plastid	31.62	30.34
CDX94484	Canola	nucleus	22.62	28.91
Bra007632.1-P	Field mustard	nucleus	35.62	27.01
HORVU2Hr1G121110.32	Barley	nucleus	27.38	26.13
CDX94528	Canola	nucleus	21.12	25.26
HORVU5Hr1G009650.20	Barley	nucleus	27.75	24.92
HORVU6Hr1G026730.9	Barley	nucleus	27.62	23.79
HORVU7Hr1G106280.1	Barley	nucleus	27.75	23.67
CDY24162	Canola	nucleus	17.88	22.0
HORVU2Hr1G109650.18	Barley	nucleus	26.0	21.73
HORVU7Hr1G033820.5	Barley	nucleus	28.12	21.11
HORVU6Hr1G020330.30	Barley	nucleus	28.62	20.07
HORVU7Hr1G051930.4	Barley	nucleus	26.88	19.85
HORVU7Hr1G096460.7	Barley	mitochondrion, nucleus, vacuole	28.75	19.13

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	UniProt:A0A287KNQ1	InterPro:AUX/IAA_dom
InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987
EnsemblPlantsGene:HORVU3Hr1G032230	EnsemblPlants:HORVU3Hr1G032230.6	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom
PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384
PANTHER:PTHR31384:SF17	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000B4641D5	SEG:seg

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A287KNQ1]

Coordinates

chrchr3H:-:163938676..163943047

Molecular Weight (calculated)

88127.6 Da

IEP (calculated)

7.056

GRAVY (calculated)

-0.438

Length

800 amino acids

Sequence
(BLAST)

001: PVTPPLCASI GCLPLRLSSP RLASPVATPP LPPRRSLMGR AQQQTLTQGE HHPVPRPDQL LPPPSLSPRP HSSFPPGEDR TAEPVHHQPT ATRVAMAQPG
101: RGRDPELFAE LWRACAGPLV EVPQRGERVF YFLQGHLEQL QEPTDSALLA EQIKMFQVPY KILCKVVNVE LKAETETDEV YAQITLQPDA DQSDLPLILD
201: PTLPETPRPV VHTFCKILTP SDTSTHGGFS VLRRHANECL PPLDMTMPTP TQEIISKDLH GSEWRFKHIY RGQPRRHLLT TGWSTFVTSK KLMAGDAFVY
301: LRSETGEQRV GVRRLVQKQS TMPASVISSQ SMHLGVLASA SHAIKTNSIF VVYYRPRLSQ SQYIVSVNKY HLASKTGFTV GMRFRMNFEA EDVPVKKFFG
401: TIVGDGDFSP QWSGSEWKSL KVQWDDSVAI CNGPERVSPW EIDSSDVSSP AISTLLQSSA KNKRPRETNE NMNLPSQEPT QEFWLSGVTQ QHERTYVGSS
501: DPNRISGSGY HQILWPSEHA GYGAMSSSSV CQTPLGLGDG WFKDFNTSSQ GVSPTLSEIT QKLNRVASSE GRAPPPWATA LCGGYRAEEP TSKLSCNATL
601: PLPSPLTEQV APYLLKVAEK VKGPGMVRLF GVNLMENTNN AAAATAGNAS VGAGETSARI TGSVEGSGQL SAFSKVTKVV NESPREIQSQ QSSIGRNRVK
701: VQMHGNAVGR AVDLASLDGY ERLTNELEQM FEIKDIKQNF KVAFNDNEGD TMKVGDDPWM EFCRMVRKIV IYPIEDDKNM DPHQTSVFAA APDEDLKANL

Best Arabidopsis Sequence Match ( AT2G46530.1 )
(BLAST)

001: MANVEADFRT SGSNDDELYT ELWKACAGPL VEVPRYGERV FYFPQGHMEQ LVASTNQGVV DQEIPVFNLP PKILCRVLSV TLKAEHETDE VYAQITLQPE
101: EDQSEPTSLD PPLVEPAKPT VDSFVKILTA SDTSTHGGFS VLRKHATECL PSLDMTQPTP TQELVARDLH GYEWRFKHIF RGQPRRHLLT TGWSTFVTSK
201: RLVAGDAFVF LRGETGDLRV GVRRLAKQQS TMPASVISSQ SMRLGVLATA SHAVTTTTIF VVFYKPRISQ FIISVNKYMM AMKNGFSLGM RYRMRFEGEE
301: SPERIFTGTI IGSGDLSSQW PASKWRSLQI QWDEPSSIQR PNKVSPWEIE PFSPSALTPT PTQQQSKSKR SRPISEITGS PVASSFLSSF SQSHESNPSV
401: KLLFQDPATE RNSNKSVFSS GLQCKITEAP VTSSCRLFGF DLTSKPASAT IPHDKQLISV DSNISDSTTK CQDPNSSNSP KEQKQQTSTR SRIKVQMQGT
501: AVGRAVDLTL LRSYDELIKE LEKMFEIEGE LSPKDKWAIV FTDDEGDRML VGDDPWNEFC KMAKKLFIYP SDEVKKMRSK SLLGDKGTIV NLESDQRTVH
601: V

Arabidopsis Description

ARF11Auxin response factor 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPY6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.