Factsheet for AT1G34390.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G34310.1	Thale cress	nucleus	90.64	91.4
AT1G35520.1	Thale cress	nucleus	90.47	91.23
AT1G35240.1	Thale cress	nucleus	88.46	89.36
AT1G34410.1	Thale cress	nucleus	90.13	88.94
AT1G35540.1	Thale cress	nucleus	87.79	86.78
AT1G34170.3	Thale cress	nucleus	50.33	55.13
Bra034234.1-P	Field mustard	nucleus	48.16	53.23
CDY21993	Canola	nucleus	48.33	53.03
CDY53570	Canola	nucleus	44.31	52.89
CDY48583	Canola	nucleus	48.33	52.83
CDY67714	Canola	nucleus	46.82	52.73
Bra027944.1-P	Field mustard	nucleus	48.33	52.64
CDY41720	Canola	nucleus	48.33	52.55
CDY49005	Canola	nucleus	48.33	51.89
CDY36940	Canola	nucleus	47.99	51.81
CDX94777	Canola	nucleus	48.16	51.71
Bra018124.1-P	Field mustard	nucleus	47.66	51.35
Bra017362.1-P	Field mustard	nucleus	45.82	50.74
CDX94748	Canola	endoplasmic reticulum, vacuole	31.27	50.54
CDY55738	Canola	nucleus	45.48	50.37
CDY24168	Canola	nucleus	47.32	50.27
CDY54111	Canola	nucleus	47.32	49.91
CDY69758	Canola	nucleus	33.78	48.56
AT4G23980.1	Thale cress	nucleus	48.66	45.61
VIT_02s0025g01740.t01	Wine grape	nucleus	47.66	41.79
KRH49135	Soybean	nucleus	46.15	41.57
CDX94484	Canola	nucleus	42.31	40.42
KRH65922	Soybean	nucleus	46.66	40.38
KRH00001	Soybean	nucleus	44.82	40.36
AT2G46530.3	Thale cress	endoplasmic reticulum, vacuole	41.14	39.55
AT3G61830.1	Thale cress	nucleus	39.8	39.53
KRH75716	Soybean	nucleus	45.65	39.45
GSMUA_AchrUn_...	Banana	nucleus	41.64	39.21
GSMUA_Achr2P19760_001	Banana	nucleus	43.14	38.62
GSMUA_Achr10P...	Banana	nucleus	42.81	38.38
PGSC0003DMT400031965	Potato	nucleus	41.3	37.71
Solyc08g082630.2.1	Tomato	nucleus	40.47	37.58
GSMUA_Achr7P24330_001	Banana	nucleus	41.81	37.54
Solyc08g008380.2.1	Tomato	nucleus	42.64	37.34
CDX94528	Canola	nucleus	41.3	36.92
AT1G59750.1	Thale cress	nucleus	40.3	36.24
Os01t0236300-01	Rice	nucleus	39.63	33.91
EES02172	Sorghum	nucleus	38.46	33.43
CDY24162	Canola	nucleus	35.79	32.92
Zm00001d039267_P005	Maize	nucleus	36.79	31.79
TraesCS3B01G190100.1	Wheat	nucleus	38.96	30.74
TraesCS3A01G159200.1	Wheat	nucleus	38.96	30.7
TraesCS3D01G166700.1	Wheat	nucleus	38.8	30.61
AT5G62000.1	Thale cress	nucleus	42.31	29.45
HORVU3Hr1G032230.6	Barley	nucleus, plastid	38.8	29.0
AT5G60450.1	Thale cress	nucleus	34.62	26.27
AT5G37020.1	Thale cress	nucleus	33.11	24.41
AT1G30330.3	Thale cress	nucleus	35.45	22.67
AT1G19850.1	Thale cress	nucleus	33.95	22.51
AT1G19220.1	Thale cress	nucleus	35.62	19.61
AT5G20730.1	Thale cress	nucleus	33.61	17.25

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:840341	ProteinID:AAG51894.1
ProteinID:AEE31708.1	Symbol:ARF22	ArrayExpress:AT1G34390	EnsemblPlantsGene:AT1G34390	RefSeq:AT1G34390	TAIR:AT1G34390
RefSeq:AT1G34390-TAIR-G	EnsemblPlants:AT1G34390.1	TAIR:AT1G34390.1	InterPro:AUX/IAA_dom	EMBL:AY669796	Unigene:At.51186
InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	RefSeq:NP_174699.2	InterPro:PB1_dom
PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384
PANTHER:PTHR31384:SF1	UniProt:Q9C8N7	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI00003588E5

Description

ARF22Auxin response factor 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N7]

Coordinates

chr1:+:12556005..12559082

Molecular Weight (calculated)

67737.0 Da

IEP (calculated)

6.054

GRAVY (calculated)

-0.379

Length

598 amino acids

Sequence
(BLAST)

001: MESGNIVNAQ PELSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGEKIYYFP QGNIELVEAS TREELNELKP ICDLPSKLQC RVIAIQLKVE NNSDETYAEI
101: TLMPDTTQVV IPTQNENQFR PLVNSFTKVL TASDTSGGFF VPKKHAIECL PPLDMSQPLP TQELLATDLH GNQWRFNHNY RGTPQRHLLT TGWNAFTTSK
201: KLVAGDVIVF VRGETGELRV GIRRAGHQQG NIPSSIISIE SMRHGVIASA KHAFDNQCMF IVVYKPRSSQ FIVSYDKFLD AVNNKFNVGS RFTMRFEGDD
301: FSERRYFGTI IGVSDFSPHW KCSEWRNLEV QWDEFASFSR PNKVSPWEIE HLMPALNVPR PSLLKNKRLR EVNEIGSSSS HLLPPILTQG QEIGQLSVAS
401: PMNISLTYRD TTEDVMNPSR LLMSYPVQPM PKLNYNNQMV TQIEENITTK TGTNFRLFGV SLVTPSVIKD PIEEIGSEIS KLTEGKKFGQ SQTLRSPTEI
501: QSKQFSSTRT CTKVQMQGVT IERAVDLSVL NGYDQLILEL EELFDLKGQL QTRNQWEIAF TDSDDDKMLV GDDPWPEFCN MVKKILIFKR GGQKLEVQ

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.