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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001670.1-P
Bra001900.1-P
Bra002327.1-P
Bra009867.1-P
Bra010048.1-P
Bra012190.1-P
Bra013748.1-P
Bra015298.1-P
Bra016492.1-P
Bra017362.1-P
Bra018124.1-P
Bra019255.1-P
Bra020125.1-P
Bra021257.1-P
Bra022224.1-P
Bra025775.1-P
Bra026755.1-P
Bra027944.1-P
Bra030560.1-P
Bra032520.1-P
Bra033886.1-P
Bra034234.1-P
Bra035427.1-P
Bra035910.1-P
Bra036557.1-P
Bra040122.1-P
Bra040398.1-P
Bra040476.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G34310.1 Bra012190.1-P AT1G19850.1 22096563
AT1G34310.1 Bra016492.1-P AT1G19850.1 22096563
AT1G34310.1 Bra025775.1-P AT1G19850.1 22096563
AT1G34310.1 Bra017362.1-P AT1G34310.1 22096563
AT1G34310.1 Bra018124.1-P AT1G34310.1 22096563
AT1G34310.1 Bra027944.1-P AT1G34310.1 22096563
AT1G34310.1 Bra034234.1-P AT1G34310.1 22096563
AT1G34310.1 Bra035427.1-P AT1G59750.1 22096563
AT1G34310.1 Bra001670.1-P AT3G17600.1 21734647
AT1G34310.1 Bra021257.1-P AT3G17600.1 21734647
AT1G34310.1 Bra022224.1-P AT3G17600.1 21734647
AT1G34310.1 Bra013748.1-P AT4G23980.1 22096563
AT1G34310.1 Bra019255.1-P AT4G23980.1 22096563
AT1G34310.1 Bra010048.1-P AT5G62000.1 21734647
AT1G34310.1 Bra035910.1-P AT5G62000.1 21734647
AT1G34390.1 Bra017362.1-P AT1G34310.1 21734647
AT1G34390.1 Bra018124.1-P AT1G34310.1 21734647
AT1G34390.1 Bra027944.1-P AT1G34310.1 21734647
AT1G34390.1 Bra034234.1-P AT1G34310.1 21734647
AT1G34390.1 Bra040476.1-P AT2G46990.1 21734647
AT1G34390.1 Bra040122.1-P AT3G04730.1 21734647
AT1G34390.1 Bra040398.1-P AT3G04730.1 21734647
AT1G34390.1 Bra001900.1-P AT3G23050.1 21734647
AT1G34390.1 Bra033886.1-P AT3G23050.1 21734647
AT1G34390.1 Bra009867.1-P AT5G25890.1 21734647
AT1G34390.1 Bra036557.1-P AT5G25890.1 21734647
AT1G35240.1 Bra015298.1-P AT1G04250.1 21734647
AT1G35240.1 Bra030560.1-P AT1G04250.1 21734647
AT1G35240.1 Bra032520.1-P AT1G04250.1 21734647
AT1G35240.1 Bra026755.1-P AT1G15580.1 21734647
AT1G35240.1 Bra002327.1-P AT5G20730.1 21734647
AT1G35240.1 Bra020125.1-P AT5G20730.1 21734647
AT1G35540.1 Bra026755.1-P AT1G15580.1 21734647
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY36940 Canola nucleus 98.56 98.74
Bra027944.1-P Field mustard nucleus 75.5 76.32
Bra017362.1-P Field mustard nucleus 70.99 72.96
Bra034234.1-P Field mustard nucleus 59.1 60.63
AT1G34390.1 Thale cress nucleus 51.35 47.66
AT1G35240.1 Thale cress nucleus 50.27 47.13
AT1G34310.1 Thale cress nucleus 50.09 46.88
AT1G34410.1 Thale cress nucleus 51.17 46.86
AT1G35520.1 Thale cress nucleus 49.55 46.37
AT1G35540.1 Thale cress nucleus 50.27 46.12
AT1G34170.3 Thale cress nucleus 45.05 45.79
Bra014419.1-P Field mustard nucleus 37.66 37.66
Bra013748.1-P Field mustard nucleus 40.18 37.04
Bra019255.1-P Field mustard nucleus 40.72 36.28
Bra004530.1-P Field mustard nucleus 37.66 35.79
VIT_02s0025g01740.t01 Wine grape nucleus 41.08 33.43
KRH49135 Soybean nucleus 39.1 32.68
KRH00001 Soybean nucleus 38.92 32.53
KRH75716 Soybean nucleus 40.54 32.51
KRH65922 Soybean nucleus 40.18 32.27
Bra025775.1-P Field mustard nucleus 26.85 31.7
GSMUA_AchrUn_... Banana nucleus 36.04 31.5
Solyc08g008380.2.1 Tomato nucleus 38.56 31.33
PGSC0003DMT400031965 Potato nucleus 36.94 31.3
GSMUA_Achr10P... Banana nucleus 36.94 30.73
Solyc08g082630.2.1 Tomato nucleus 35.32 30.43
GSMUA_Achr7P24330_001 Banana nucleus 36.04 30.03
GSMUA_Achr2P19760_001 Banana nucleus 36.04 29.94
Bra035427.1-P Field mustard nucleus 35.32 29.47
Os01t0236300-01 Rice nucleus 33.87 26.9
EES02172 Sorghum nucleus 33.15 26.74
Zm00001d039267_P005 Maize nucleus 31.53 25.29
TraesCS3B01G190100.1 Wheat nucleus 33.87 24.8
TraesCS3D01G166700.1 Wheat nucleus 33.87 24.8
Bra010048.1-P Field mustard nucleus 38.02 24.79
TraesCS3A01G159200.1 Wheat nucleus 33.87 24.77
HORVU3Hr1G032230.6 Barley nucleus, plastid 34.41 23.88
Bra035910.1-P Field mustard nucleus 37.12 23.2
Bra004125.1-P Field mustard nucleus 32.07 22.82
Bra002479.1-P Field mustard nucleus 30.09 22.03
Bra028110.1-P Field mustard nucleus 31.17 20.5
Bra007632.1-P Field mustard nucleus 37.3 19.62
Bra010776.1-P Field mustard nucleus 28.65 19.11
Bra016492.1-P Field mustard nucleus 28.65 19.02
Bra012190.1-P Field mustard nucleus 29.19 18.69
Bra016517.1-P Field mustard nucleus 30.09 16.53
Bra025720.1-P Field mustard nucleus 31.17 16.49
Bra020125.1-P Field mustard nucleus 30.09 15.18
Bra002327.1-P Field mustard nucleus 29.37 11.33
Protein Annotations
MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90ProteinID:AFD01321ProteinID:AFD01321.1
InterPro:AUX/IAA_domInterPro:Auxin_respInterPro:B3_DNA-bdEnsemblPlantsGene:Bra018124EnsemblPlants:Bra018124.1EnsemblPlants:Bra018124.1-P
InterPro:DNA-bd_pseudobarrel_sfGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351
GO:GO:0006355GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009719GO:GO:0009725GO:GO:0009734GO:GO:0009987UniProt:H9B4E8InterPro:IPR000270
InterPro:IPR003340InterPro:IPR015300EMBL:JN979487InterPro:PB1_domPFAM:PF02309PFAM:PF02362
PFAM:PF06507PFscan:PS50863PFscan:PS51745PANTHER:PTHR31384PANTHER:PTHR31384:SF1SMART:SM01019
SUPFAM:SSF101936SUPFAM:SSF54277UniParc:UPI0002535828SEG:seg::
Description
AT1G34170 (E=1e-116) | transcription factor
Coordinates
chrA06:+:10420978..10423956
Molecular Weight (calculated)
62834.9 Da
IEP (calculated)
6.791
GRAVY (calculated)
-0.459
Length
555 amino acids
Sequence
(BLAST)
001: MASDQIMHVQ PEFLATGGTN NYLYDQLWKL CAGPLFDPPK IGEELVTSIN DELCQLKPVF NIPSKIRCNV FSIKLKVETT TDEIYAEISL LPDTSEVEIP
101: TSKCENNIQN IKCFTKVLSA SDTSKKGGFV LNKRHAIECL PPLDMSHLTP SQEINATDIH GHEWKFKHAL KGTPKRHLFT SGWNEFAKAK KLVVGDSFIF
201: LRGENGESRV GIKKAAHHQQ ENIPSSIISK ESMHHGVVAT ALNAIKNKCM FVVFYKPRSS QFVVNIDKFR DGVNKKFSIG SRFLMKFEGK DFNEISERFL
301: PHWKDSEWRC LEVQWDEAAT IPRPDKVSPW EIEPLTHSSD ILKSGSNMWV PTLTQGQEVG HSSIQSSMSY SFATTMSKPN YNEQMVQAMK ETSTTTATTS
401: YRLFGVDLKV PAKTKDSIEP INSYKKSKIS KIFEEEKVDH IQTRSHTKVR MEGAMERTVD LSIFDGYNQL IDELERLFDI KGKLHIHNQW KIVFINADGD
501: IMLLGDDPWP KFCNTAEEIF ICSKNDAKVG DADNKFSEGD PILTTTNLPP DVNNN
Best Arabidopsis Sequence Match ( AT1G34410.1 )
(BLAST)
001: MESGNIVNAQ PKLSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGENVYYFP QGNIELVQAS TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDEIYAEI
101: TLMPDTTQVV IPTQSENRFR PLVNSFTKVL TASDTSAYGG FSVPKKHAIE CLPPLDMSQP LPAQEILAID LHDNQWRFRH NYRGTPQRHS LTTGWNEFIT
201: SKKLVKGDVI VFVRGETGEL RVGIRRARHQ QGNIPSSIVS IDCMRHGVIA SAKHAFDNQC IFIVVYKPRS SQFIVSYDKF LDAVNNKFNV GSRFTMRFEG
301: DDFSERRYFG TIIGVSDFSP HWKCSEWRSL EVQWDEFASF SRPNKVSPWE IEHLVPALNV PRSSLLKNKR LREVNEFGSS SSHLLPPILT QGQEIGQLSV
401: ASPMNISLRY RDTTEAAMNP SRLLMSYPVQ PMPKLNYNNQ MVTQIEENIT TKAGTNFRLF GVTLDTPPMI KDPIKQIGSD ISKLTERKKF GQSQTLRSPI
501: EIQSKQFSSS RTCTKVQMQG VTIGRAVDLS VLNGYDQLIL ELEKLFDIKG QLQTRNQWKI AFTDSDGYEM LVGDDPWPEF CKMVKKILIY SKEEVKNLKS
601: SKSLSS
Arabidopsis Description
ARF21Putative auxin response factor 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.