Factsheet for Bra010776.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90245	Canola	nucleus	99.88	97.54
KRH58711	Soybean	nucleus	42.31	89.57
AT1G30330.3	Thale cress	nucleus	93.27	82.99
VIT_10s0003g04100.t01	Wine grape	nucleus	74.4	68.17
KRH21113	Soybean	nucleus	73.2	67.97
KRH11131	Soybean	nucleus	72.96	67.59
GSMUA_Achr5P02450_001	Banana	nucleus	65.5	65.82
KRH42603	Soybean	nucleus	70.67	64.97
GSMUA_Achr5P26580_001	Banana	nucleus	62.5	64.44
GSMUA_Achr3P23290_001	Banana	nucleus	63.34	64.27
TraesCS7A01G461700.1	Wheat	nucleus	66.23	60.62
TraesCS7B01G363100.1	Wheat	nucleus	66.23	60.62
TraesCS7D01G449900.2	Wheat	nucleus	66.11	60.57
GSMUA_Achr6P19850_001	Banana	nucleus	62.14	60.47
GSMUA_Achr11P...	Banana	nucleus	60.1	60.31
GSMUA_Achr11P...	Banana	nucleus	66.11	60.24
GSMUA_Achr5P00590_001	Banana	nucleus	65.62	60.07
EER90218	Sorghum	nucleus	65.62	59.41
Os02t0164900-01	Rice	nucleus	64.78	59.36
Zm00001d014377_P002	Maize	nucleus	65.38	59.32
Os06t0677800-01	Rice	nucleus	65.14	59.11
HORVU7Hr1G106280.1	Barley	nucleus	66.35	58.85
EES04575	Sorghum	nucleus	64.3	58.73
EES17392	Sorghum	nucleus	62.98	58.55
TraesCS6D01G127600.2	Wheat	nucleus	65.14	58.47
TraesCS6B01G167100.1	Wheat	nucleus	64.78	58.14
Zm00001d041497_P005	Maize	nucleus	62.02	58.11
Zm00001d031064_P003	Maize	nucleus	62.62	58.08
TraesCS6A01G138600.4	Wheat	nucleus	64.66	57.97
Zm00001d053819_P002	Maize	nucleus	63.34	57.34
Bra004125.1-P	Field mustard	nucleus	53.61	57.18
HORVU6Hr1G026730.9	Barley	nucleus	63.82	57.16
Os12t0613700-01	Rice	nucleus	61.3	56.73
HORVU5Hr1G009650.20	Barley	nucleus	60.22	56.23
TraesCS5B01G039800.1	Wheat	nucleus	60.1	56.12
Zm00001d036593_P001	Maize	plastid	64.42	55.83
TraesCS5A01G038300.2	Wheat	nucleus	60.22	55.73
TraesCS5D01G045700.2	Wheat	nucleus	60.1	55.56
Bra028110.1-P	Field mustard	nucleus	54.69	53.91
Bra025775.1-P	Field mustard	nucleus	30.41	53.83
Bra014419.1-P	Field mustard	nucleus	26.32	39.46
Bra004530.1-P	Field mustard	nucleus	26.92	38.36
Bra016492.1-P	Field mustard	nucleus	37.86	37.68
Bra012190.1-P	Field mustard	nucleus	37.98	36.45
Bra019255.1-P	Field mustard	nucleus	26.44	35.31
Bra013748.1-P	Field mustard	nucleus	25.48	35.22
Bra025720.1-P	Field mustard	nucleus	44.35	35.18
Bra016517.1-P	Field mustard	nucleus	42.55	35.05
Bra035427.1-P	Field mustard	nucleus	27.28	34.14
Bra034234.1-P	Field mustard	nucleus	21.88	33.64
Bra020125.1-P	Field mustard	nucleus	44.23	33.45
Bra010048.1-P	Field mustard	nucleus	32.33	31.61
Bra002479.1-P	Field mustard	nucleus	28.37	31.13
Bra027944.1-P	Field mustard	nucleus	20.19	30.6
Bra035910.1-P	Field mustard	nucleus	31.73	29.73
Bra018124.1-P	Field mustard	nucleus	19.11	28.65
Bra017362.1-P	Field mustard	nucleus	18.03	27.78
Bra002327.1-P	Field mustard	nucleus	43.51	25.16
Bra007632.1-P	Field mustard	nucleus	26.68	21.04

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	ProteinID:AFD01302	ProteinID:AFD01302.1
InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra010776	EnsemblPlants:Bra010776.1	EnsemblPlants:Bra010776.1-P	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009733	GO:GO:0009734	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	EMBL:JN979468	UniProt:M4D2S3	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF68	SMART:SM01019	SUPFAM:SSF101936
UniParc:UPI0002546F10	SEG:seg	:	:	:	:

Description

AT1G30330 (E=3e-247) ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6); transcription factor

Coordinates

chrA08:+:16382965..16387017

Molecular Weight (calculated)

91739.1 Da

IEP (calculated)

6.704

GRAVY (calculated)

-0.437

Length

832 amino acids

Sequence
(BLAST)

001: MRLSSAGFNP HPHPHEVTGE KRVLNSELWH ACAGPLVSLP PLGSRVVYFP QGHSEQVAAS TNKEVDAHTP NYPSLQPQLI CQLHNVTMHA DVETDEVYAQ
101: MTLQPLNAQE QKDSYLAAEL GVPSRQPTNY FCKTLTASDT STHGGFSVPR RAAEKVFPPL DYTQQPPAQE LMARDLHDNE WKFRHIFRGQ PKRHLLTTGW
201: SVFVSAKRLV AGDSVLFIWN DKNQLLLGIR RAHRPQTVMP SSVLSSDSMH LGLLAAAAHA ASTNSRFTIF YNPRASPSEF VIPLAKYVKA VYHTRVSVGM
301: RFRMLFETEE SSVRRYMGTI TGICDLDPAR WANSHWRSVK VGWDESTAGD RQPRVSLWEI EPLTTFPMYP SPFPLRLKRP WPSGLPSFHG LKEDDMGMGM
401: GMSSPLMWDR GLQSMNFQGM GVNPWMQPRL DASGLLGMQN DAYQAMAAAA LQDMRGIDPA KAAASLLQFQ SPSGFSMQPP SLVQPQMLQQ QLSQQQQQVV
501: DNHNLSASSA AMSQSNTSLL QSMTPLCHQQ SFSDTNGGNN PITQLHTLLS NFPQDESSQL LNLTRTNSAM TSSGWPSKRP AIDSSFQHST AVNNNQSVME
601: QLGQSHTSNV SPNAVSLPPF PSGQEENHSD PHSHLLFGVN IDSSSLLIPN GMSNLRSIGI EGGDSTTLPF TSSTFNNEFS GTMTTPSSCI EEPGFLQPSE
701: NQQSNTFVKV YKSGSFGRSL DITKFSSYNE LRSELARMFG LEGQLEDPVR SGWQLVFVGR EEFVSSVWCI KILSPQEVQQ MGKRGLELLN SAPSSDNVDK
801: VPSNGNCDDF GNRSDPRSLG NGIASVGGSF NY

Best Arabidopsis Sequence Match ( AT1G30330.2 )
(BLAST)

001: MRLSSAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT
101: LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS
401: PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSPG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ
501: QQQQLSQQQQ QQLSQQQQQQ LSQQQQQQLS QQQQQQAYLG VPETHQPQSQ AQSQSNNHLS QQQQQVVDNH NPSASSAAVV SAMSQFGSAS QPNTSPLQSM
601: TSLCHQQSFS DTNGGNNPIS PLHTLLSNFS QDESSQLLHL TRTNSAMTSS GWPSKRPAVD SSFQHSGAGN NNTQSVLEQL GQSHTSNVPP NAVSLPPFPG
701: GRECSIEQEG SASDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTSSNFN NDFSGNLAMT TPSSCIDESG FLQSSENLGS ENPQSNTFVK
801: VYKSGSFGRS LDISKFSSYH ELRSELARMF GLEGQLEDPV RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE LLNSAPSSNN
901: VDKLPSNGNC DDFGNRSDPR NLGNGIASVG GSFNY

Arabidopsis Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.