Factsheet for Zm00001d014377_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052637_P001	Maize	mitochondrion	8.83	98.78
EER90218	Sorghum	nucleus	95.53	95.32
Os06t0677800-01	Rice	nucleus	88.88	88.88
KRH58711	Soybean	nucleus	38.06	88.8
Zm00001d036593_P001	Maize	plastid	92.8	88.65
TraesCS7B01G363100.1	Wheat	nucleus	85.5	86.25
TraesCS7A01G461700.1	Wheat	nucleus	85.5	86.25
TraesCS7D01G449900.2	Wheat	nucleus	85.28	86.12
HORVU7Hr1G106280.1	Barley	nucleus	85.82	83.9
Zm00001d053819_P002	Maize	nucleus	76.99	76.82
GSMUA_Achr5P00590_001	Banana	nucleus	68.59	69.2
GSMUA_Achr11P...	Banana	nucleus	62.49	69.12
VIT_10s0003g04100.t01	Wine grape	nucleus	67.94	68.61
GSMUA_Achr6P19850_001	Banana	nucleus	62.16	66.67
KRH11131	Soybean	nucleus	64.89	66.26
KRH21113	Soybean	nucleus	64.12	65.62
CDY12048	Canola	nucleus	60.41	65.41
CDY02285	Canola	nucleus	62.27	65.41
Bra010776.1-P	Field mustard	nucleus	59.32	65.38
CDX90245	Canola	nucleus	60.63	65.26
CDY09598	Canola	nucleus	61.18	64.48
KRH42603	Soybean	nucleus	63.58	64.42
AT1G30330.3	Thale cress	nucleus	63.9	62.67
Zm00001d031064_P003	Maize	nucleus	59.98	61.32
Zm00001d041497_P005	Maize	nucleus	59.32	61.26
Zm00001d001879_P036	Maize	nucleus	53.87	60.47
Zm00001d026590_P003	Maize	nucleus	51.04	55.19
Zm00001d045026_P002	Maize	nucleus	46.35	40.36
Zm00001d050781_P001	Maize	nucleus	26.83	39.05
Zm00001d003601_P006	Maize	nucleus	26.94	36.22
Zm00001d016838_P001	Maize	nucleus	27.7	36.13
Zm00001d001945_P002	Maize	nucleus	36.31	35.13
Zm00001d026540_P002	Maize	nucleus	36.42	34.83
Zm00001d031522_P007	Maize	nucleus	41.11	34.71
Zm00001d014690_P014	Maize	nucleus	43.73	33.58
Zm00001d015243_P001	Maize	nucleus	38.93	32.69
Zm00001d023659_P007	Maize	nucleus	28.68	31.84
Zm00001d042267_P003	Maize	nucleus	28.24	31.66
Zm00001d011953_P002	Maize	nucleus	27.48	31.27
Zm00001d041056_P019	Maize	nucleus	28.46	30.92
Zm00001d049295_P001	Maize	nucleus	27.59	28.88
Zm00001d039267_P005	Maize	nucleus	21.7	28.76

Protein Annotations

EntrezGene:100502480	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	UniProt:A0A1D6GSR8
ProteinID:AQK66068.1	ProteinID:AQK66077.1	InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745
PANTHER:PTHR31384	PANTHER:PTHR31384:SF22	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000844FBFC
EnsemblPlantsGene:Zm00001d014377	EnsemblPlants:Zm00001d014377_P002	EnsemblPlants:Zm00001d014377_T002	SEG:seg	:	:

Description

ARF-transcription factor 18Auxin response factor 18

Coordinates

chr5:+:43566076..43572737

Molecular Weight (calculated)

101361.0 Da

IEP (calculated)

6.473

GRAVY (calculated)

-0.427

Length

917 amino acids

Sequence
(BLAST)

001: MRLSSSSGSV LPAQPGSPEA VEEHKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV AASTNKEIES QIPNYPNLPP QLICQLHNVT MHADAETDEV
101: YAQMTLQPLN PQELKDPYLP AELGSANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP CQELMAKDLH GNEWKFRHIF RGQPKRHLLT
201: TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPSCFC RASPSEFVIP LVKYVKAVYH
301: TRISVGMRFR MLFETEESSV RRYMGTITGI CDLDSVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSPF PLRLKRPWPT GLPSLHGGKD
401: DDLANSLMWL RDTANPGFQS LNFGGLGMSP WMQPRLDATL LGLQPDMYQA MATAAFQDAT KQASPTMLQF QQPQNIAGRA SPLLSSQILQ QAHHQFQQQP
501: YLQNISESTI QAQGQSEFLK QQIQRSQSFN EQKPQMQHQQ ESQQQQQPQC LPVPQHQQMQ QQNMTNYQSI SNALSPFSQL SPVSQSSPMA LQTILPFSQA
601: QSFTDTNVGS LSPSNGNTMQ NTLRPFSSEA VSHLSMPRPT AIPVADPWSS KRVAVESLLP SRPQVSSQME QLDPAPASIP HSSALAPLPG RGCLVDQDVN
701: SDPQNHLLFG VSIDSQSLLM QGGIPGLQNG NDSAAIPYST SNFLSPSQND FPLDHTLNSS GCLDDSGYVP PCSDNSDKVN RPPATFVKVY KSGTYGRSLD
801: ITRFSSYHEL RRELGRLFGL EGQLEDPLRS GWQLVFVDRE EDVLLVGDDP WQEFVSTVSC IKILSPQEVQ QMGKQGLELL SSAPARRLGS SCDDYVSRQE
901: SRSLSTGIAS VGSVELG

Best Arabidopsis Sequence Match ( AT1G30330.1 )
(BLAST)

001: MRLSSAGFNP QPHEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LHPQLICQLH NVTMHADVET DEVYAQMTLQ
101: PLNAQEQKDP YLPAELGVPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELMAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIC DLDPTRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGLKED DMGMSMSSPL
401: MWDRGLQSLN FQGMGVNPWM QPRLDTSGLL GMQNDVYQAM AAAALQDMRG IDPAKAAASL LQFQNSPGFS MQSPSLVQPQ MLQQQLSQQQ QQLSQQQQQQ
501: QQLSQQQQQQ LSQQQQQQLS QQQQQQLSQQ QQQQAYLGVP ETHQPQSQAQ SQSNNHLSQQ QQQVVDNHNP SASSAAVVSA MSQFGSASQP NTSPLQSMTS
601: LCHQQSFSDT NGGNNPISPL HTLLSNFSQD ESSQLLHLTR TNSAMTSSGW PSKRPAVDSS FQHSGAGNNN TQSVLEQLGQ SHTSNVPPNA VSLPPFPGGR
701: ECSIEQEGSA SDPHSHLLFG VNIDSSSLLM PNGMSNLRSI GIEGGDSTTL PFTSSNFNND FSGNLAMTTP SSCIDESGFL QSSENLGSEN PQSNTFVKVY
801: KSGSFGRSLD ISKFSSYHEL RSELARMFGL EGQLEDPVRS GWQLVFVDRE NDVLLLGDDP WPEFVSSVWC IKILSPQEVQ QMGKRGLELL NSAPSSNNVD
901: KLPSNGNCDD FGNRSDPRNL GNGIASVGGS FNY

Arabidopsis Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.