Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90245 | Canola | nucleus | 98.58 | 98.0 |
| KRH58711 | Soybean | nucleus | 41.56 | 89.57 |
| CDY02285 | Canola | nucleus | 91.03 | 88.32 |
| CDY09598 | Canola | nucleus | 88.43 | 86.09 |
| AT1G30330.3 | Thale cress | nucleus | 93.03 | 84.28 |
| VIT_10s0003g04100.t01 | Wine grape | nucleus | 74.62 | 69.6 |
| KRH21113 | Soybean | nucleus | 73.2 | 69.2 |
| KRH11131 | Soybean | nucleus | 72.85 | 68.71 |
| GSMUA_Achr5P02450_001 | Banana | nucleus | 65.41 | 66.91 |
| KRH42603 | Soybean | nucleus | 70.72 | 66.19 |
| GSMUA_Achr5P26580_001 | Banana | nucleus | 62.46 | 65.55 |
| GSMUA_Achr3P23290_001 | Banana | nucleus | 63.4 | 65.49 |
| TraesCS7B01G363100.1 | Wheat | nucleus | 66.23 | 61.72 |
| TraesCS7A01G461700.1 | Wheat | nucleus | 66.23 | 61.72 |
| TraesCS7D01G449900.2 | Wheat | nucleus | 66.12 | 61.67 |
| GSMUA_Achr11P... | Banana | nucleus | 60.33 | 61.64 |
| GSMUA_Achr6P19850_001 | Banana | nucleus | 61.98 | 61.4 |
| GSMUA_Achr11P... | Banana | nucleus | 65.76 | 61.01 |
| GSMUA_Achr5P00590_001 | Banana | nucleus | 65.41 | 60.95 |
| EER90218 | Sorghum | nucleus | 65.64 | 60.5 |
| Zm00001d014377_P002 | Maize | nucleus | 65.41 | 60.41 |
| Os02t0164900-01 | Rice | nucleus | 64.7 | 60.35 |
| Os06t0677800-01 | Rice | nucleus | 65.17 | 60.2 |
| HORVU7Hr1G106280.1 | Barley | nucleus | 66.35 | 59.91 |
| EES04575 | Sorghum | nucleus | 64.34 | 59.82 |
| EES17392 | Sorghum | nucleus | 62.93 | 59.55 |
| TraesCS6D01G127600.2 | Wheat | nucleus | 65.05 | 59.44 |
| Zm00001d031064_P003 | Maize | nucleus | 62.81 | 59.31 |
| Zm00001d041497_P005 | Maize | nucleus | 61.98 | 59.12 |
| TraesCS6B01G167100.1 | Wheat | nucleus | 64.7 | 59.12 |
| TraesCS6A01G138600.4 | Wheat | nucleus | 64.58 | 58.94 |
| Zm00001d053819_P002 | Maize | nucleus | 63.4 | 58.43 |
| CDY07460 | Canola | nucleus | 53.72 | 58.26 |
| HORVU6Hr1G026730.9 | Barley | nucleus | 63.87 | 58.23 |
| CDY39274 | Canola | nucleus | 53.25 | 57.89 |
| Os12t0613700-01 | Rice | nucleus | 61.28 | 57.73 |
| HORVU5Hr1G009650.20 | Barley | nucleus | 60.45 | 57.46 |
| TraesCS5B01G039800.1 | Wheat | nucleus | 60.21 | 57.24 |
| CDY53537 | Canola | nucleus | 54.9 | 57.13 |
| TraesCS5A01G038300.2 | Wheat | nucleus | 60.33 | 56.84 |
| CDX74594 | Canola | nucleus | 54.9 | 56.78 |
| Zm00001d036593_P001 | Maize | plastid | 64.34 | 56.77 |
| TraesCS5D01G045700.2 | Wheat | nucleus | 60.21 | 56.67 |
| CDX80025 | Canola | nucleus | 27.75 | 40.24 |
| CDX95705 | Canola | nucleus | 25.38 | 39.45 |
| CDX83741 | Canola | nucleus | 38.61 | 38.65 |
| CDY62586 | Canola | nucleus | 38.61 | 38.65 |
| CDY27291 | Canola | nucleus | 27.98 | 38.29 |
| CDY29392 | Canola | nucleus | 39.32 | 38.01 |
| CDY61164 | Canola | nucleus | 38.61 | 37.98 |
| CDY01393 | Canola | nucleus | 38.61 | 37.8 |
| CDY39348 | Canola | nucleus | 38.84 | 37.43 |
| CDY47607 | Canola | nucleus | 26.56 | 37.25 |
| CDY10978 | Canola | nucleus | 27.15 | 36.8 |
| CDX96672 | Canola | nucleus | 44.16 | 36.67 |
| CDX83778 | Canola | nucleus | 43.92 | 36.47 |
| CDY26690 | Canola | nucleus | 44.98 | 36.32 |
| CDY50434 | Canola | nucleus | 26.8 | 36.32 |
| CDY41030 | Canola | nucleus | 45.1 | 36.11 |
| CDY03502 | Canola | nucleus | 25.38 | 35.83 |
| CDY69758 | Canola | nucleus | 17.59 | 35.82 |
| CDY65065 | Canola | nucleus | 27.86 | 35.7 |
| CDY67714 | Canola | nucleus | 22.31 | 35.59 |
| CDX92437 | Canola | nucleus | 43.68 | 35.58 |
| CDY33603 | Canola | nucleus | 27.75 | 35.55 |
| CDY48583 | Canola | nucleus | 22.79 | 35.28 |
| CDY21993 | Canola | nucleus | 22.67 | 35.23 |
| CDY16560 | Canola | nucleus | 42.86 | 34.84 |
| CDY45069 | Canola | nucleus | 43.68 | 33.24 |
| CDX86939 | Canola | nucleus | 33.29 | 33.18 |
| CDX87230 | Canola | nucleus | 32.11 | 32.85 |
| CDY00245 | Canola | nucleus | 32.94 | 32.78 |
| CDY67247 | Canola | nucleus | 32.82 | 32.67 |
| CDY31545 | Canola | nucleus | 29.16 | 32.63 |
| CDY53570 | Canola | nucleus | 19.13 | 32.34 |
| CDX80168 | Canola | nucleus | 28.93 | 32.28 |
| CDY41720 | Canola | nucleus | 20.9 | 32.18 |
| CDX94777 | Canola | nucleus | 20.66 | 31.42 |
| CDY16798 | Canola | nucleus | 32.35 | 31.24 |
| CDY49005 | Canola | nucleus | 20.43 | 31.06 |
| CDX94748 | Canola | endoplasmic reticulum, vacuole | 13.46 | 30.81 |
| CDY36940 | Canola | nucleus | 20.07 | 30.69 |
| CDY24168 | Canola | nucleus | 19.83 | 29.84 |
| CDY54111 | Canola | nucleus | 19.83 | 29.63 |
| CDY55738 | Canola | nucleus | 18.77 | 29.44 |
| CDX94484 | Canola | nucleus | 19.24 | 26.04 |
| CDX94528 | Canola | nucleus | 18.3 | 23.17 |
| CDY24162 | Canola | nucleus | 15.23 | 19.85 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | GO:A0A078FIW5 | UniProt:A0A078FIW5 |
| InterPro:AUX/IAA_dom | InterPro:Auxin_resp | InterPro:B3_DNA-bd | EnsemblPlants:CDY12048 | ProteinID:CDY12048 | ProteinID:CDY12048.1 |
| InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00060998001 | InterPro:IPR000270 |
| InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 |
| PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF68 | SMART:SM01019 | SUPFAM:SSF101936 |
| SUPFAM:SSF54277 | UniParc:UPI0004EE08A8 | SEG:seg | : | : | : |
Description
BnaC03g59640DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078FIW5]
Coordinates
chrLK032017:-:39251..43383
Molecular Weight (calculated)
93449.1 Da
IEP (calculated)
6.510
GRAVY (calculated)
-0.452
Length
847 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLSSAGFNP HPHEGEKRVL NSELWHACAG PLVSLPPLGS RVVYFPQGHS EQVAASTNKE VDAHTPNYPS LQPQLICQLH NVTMHADVET DEVYAQMTLQ
101: PLNGQEQKDP YLAAELGVPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYTQ QPPAQELMAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNDKNQ LLLGIRRAHR PQTVMPSSVL SSDSMHLGLL AAAAHAASTN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIC DLDPARWANS HWRSVKVGWD ESTAGDRQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPSG LPSFHGLKED DMGMGMGMSS
401: PLMWDRGLQP MNFQGMGVNP WMQPRPLDAS GLLGMQNDAY QAMAAAALQD MRGIDPAKAA ASLLQFQNPS GFSVQPPSLV QPQMLQQQLT QQHQQQLSQQ
501: QVVDNHNLSA SSAAMSQSNT SLLQSMTPLC HQQSFSDTNG GNNPITQLHT LLSNFPQDES SQLLNLTRTN SAMTSSGWPS KRPAIDSSFQ HSTAVNNNQS
601: VMEQLGQSHT SNVSPNAVSL PPFPSGQEEN PSDPHSHLLF GVNIDSSSLL IPNGMSNLRS IGIEGGDSTT LPFTSSTFNN EFSGTMTTPS SCIEEQGFLQ
701: PSENQQSNTF VKVHKSGSFG RSLDITKFSS YNELRSELAR MFGLEGQLED PVRSGWQLVF VDRENDVLLL GDDPWPEFVS SVWCIKILSP QEVQQMGKRG
801: LELLNSAPSS TNVDKVPSNG NCDDLGNRSD PRSLGNGIAS VGGSFNY
101: PLNGQEQKDP YLAAELGVPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYTQ QPPAQELMAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNDKNQ LLLGIRRAHR PQTVMPSSVL SSDSMHLGLL AAAAHAASTN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIC DLDPARWANS HWRSVKVGWD ESTAGDRQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPSG LPSFHGLKED DMGMGMGMSS
401: PLMWDRGLQP MNFQGMGVNP WMQPRPLDAS GLLGMQNDAY QAMAAAALQD MRGIDPAKAA ASLLQFQNPS GFSVQPPSLV QPQMLQQQLT QQHQQQLSQQ
501: QVVDNHNLSA SSAAMSQSNT SLLQSMTPLC HQQSFSDTNG GNNPITQLHT LLSNFPQDES SQLLNLTRTN SAMTSSGWPS KRPAIDSSFQ HSTAVNNNQS
601: VMEQLGQSHT SNVSPNAVSL PPFPSGQEEN PSDPHSHLLF GVNIDSSSLL IPNGMSNLRS IGIEGGDSTT LPFTSSTFNN EFSGTMTTPS SCIEEQGFLQ
701: PSENQQSNTF VKVHKSGSFG RSLDITKFSS YNELRSELAR MFGLEGQLED PVRSGWQLVF VDRENDVLLL GDDPWPEFVS SVWCIKILSP QEVQQMGKRG
801: LELLNSAPSS TNVDKVPSNG NCDDLGNRSD PRSLGNGIAS VGGSFNY
001: MRLSSAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT
101: LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS
401: PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSPG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ
501: QQQQLSQQQQ QQLSQQQQQQ LSQQQQQQLS QQQQQQAYLG VPETHQPQSQ AQSQSNNHLS QQQQQVVDNH NPSASSAAVV SAMSQFGSAS QPNTSPLQSM
601: TSLCHQQSFS DTNGGNNPIS PLHTLLSNFS QDESSQLLHL TRTNSAMTSS GWPSKRPAVD SSFQHSGAGN NNTQSVLEQL GQSHTSNVPP NAVSLPPFPG
701: GRECSIEQEG SASDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTSSNFN NDFSGNLAMT TPSSCIDESG FLQSSENLGS ENPQSNTFVK
801: VYKSGSFGRS LDISKFSSYH ELRSELARMF GLEGQLEDPV RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE LLNSAPSSNN
901: VDKLPSNGNC DDFGNRSDPR NLGNGIASVG GSFNY
101: LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS
401: PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSPG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ
501: QQQQLSQQQQ QQLSQQQQQQ LSQQQQQQLS QQQQQQAYLG VPETHQPQSQ AQSQSNNHLS QQQQQVVDNH NPSASSAAVV SAMSQFGSAS QPNTSPLQSM
601: TSLCHQQSFS DTNGGNNPIS PLHTLLSNFS QDESSQLLHL TRTNSAMTSS GWPSKRPAVD SSFQHSGAGN NNTQSVLEQL GQSHTSNVPP NAVSLPPFPG
701: GRECSIEQEG SASDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTSSNFN NDFSGNLAMT TPSSCIDESG FLQSSENLGS ENPQSNTFVK
801: VYKSGSFGRS LDISKFSSYH ELRSELARMF GLEGQLEDPV RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE LLNSAPSSNN
901: VDKLPSNGNC DDFGNRSDPR NLGNGIASVG GSFNY
Arabidopsis Description
ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.